RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ELAVL4P26378 380 aaKnown RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 PTPN6P29350 595 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 NTSP30990 170 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 TLX1P31314 330 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 SOAT1P35610 550 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 FEN1P39748 380 aaKnown RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 FRKP42685 505 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 TRPC1P48995 793 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 MTPNP58546 118 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 AP2B1P63010 937 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 HBA1P69905 142 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 HSPB3Q12988 150 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 RABL3Q5HYI8 236 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 SP5Q6BEB4 398 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 ZNF551Q7Z340 670 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 LAPTM4BQ86VI4 370 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 OR4N5Q8IXE1 308 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 ULK2Q8IYT8 1036 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 CLEC4FQ8N1N0 589 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 SIRT6Q8N6T7 355 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 OR51Q1Q8NH59 317 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 HAS2Q92819 552 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 TMEM125Q96AQ2 219 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 RAB3IPQ96QF0 476 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 TAAR6Q96RI8 345 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 BBS4Q96RK4 519 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 HOPXQ9BPY8 73 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 CPPED1Q9BRF8 314 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 YIPF2Q9BWQ6 316 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 GLIPR2Q9H4G4 154 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 SPAG4Q9NPE6 437 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 MKKSQ9NPJ1 570 aaPredicted RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 GIMAP4Q9NUV9 329 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 CMTM6Q9NX76 183 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 TRPC4Q9UBN4 977 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 PRPF19Q9UMS4 504 aaKnown RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 PCDHB14Q9Y5E9 798 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 FGF17O60258 216 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 CDC123O75794 336 aaPredicted RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 NPPAP01160 153 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 HEXBP07686 556 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 XCR1P46094 333 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 CDK9P50750 372 aaKnown RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 NCBP2P52298 156 aaKnown RBP eCLIP11.78□□□□□ -0.52
UPF1-208ENST00000600012 MANFP55145 182 aaKnown RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 EEF1A2Q05639 463 aaKnown RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 CEACAM7Q14002 265 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 RUNDC3AQ59EK9 446 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 NANOGP8Q6NSW7 305 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 GFRALQ6UXV0 394 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 ZNF621Q6ZSS3 439 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 SCUBE1Q8IWY4 988 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 SLC15A3Q8IY34 581 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 ARHGAP24Q8N264 748 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 FAM156AQ8NDB6 213 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 OR5P2Q8WZ92 322 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 CCDC124Q96CT7 223 aaKnown RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 ZBED6CLQ96FA7 236 aaPredicted RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 ANKRD27Q96NW4 1050 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 TGIF2Q9GZN2 237 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 RNF32Q9H0A6 362 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.78□□□□□ -0.52
UPF1-208ENST00000600012 IKZF5Q9H5V7 419 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 CXorf36Q9H7Y0 433 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 NANOGQ9H9S0 305 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 TAS2R7Q9NYW3 318 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 PLA2G3Q9NZ20 509 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 ABI3Q9P2A4 366 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 TMEM181Q9P2C4 612 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 ABCD2Q9UBJ2 740 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 SUCOQ9UBS9 1254 aaKnown RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 L3MBTL1Q9Y468 752 aa11.78□□□□□ -0.52
UPF1-208ENST00000600012 KLF2Q9Y5W3 355 aaPredicted RBP11.78□□□□□ -0.52
UPF1-208ENST00000600012 LOC102723996A0A087X1L8 192 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 C15orf38-AP3S2A0A0A6YYH1 394 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 A8MUI8 341 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 MYO1GB0I1T2 1018 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 B4GALT2O60909 372 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 CRYABP02511 175 aaKnown RBP11.77□□□□□ -0.53
UPF1-208ENST00000600012 ICAM2P13598 275 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 CSNK2A2P19784 350 aaPredicted RBP11.77□□□□□ -0.53
UPF1-208ENST00000600012 CORO7P57737 925 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 FOLH1Q04609 750 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 LRRC74AQ0VAA2 488 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 LTB4RQ15722 352 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.77□□□□□ -0.53
UPF1-208ENST00000600012 PIGGQ5H8A4 983 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 FAAH2Q6GMR7 532 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 MTFR2Q6P444 385 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 PGM2L1Q6PCE3 622 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 ARPINQ7Z6K5 226 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 MCEMP1Q8IX19 187 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 CCDC116Q8IYX3 515 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 NATD1Q8N6N6 113 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 OR4K14Q8NGD5 310 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 OR5AK3PQ8NH89 298 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 DNAJB8Q8NHS0 232 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 GOT1L1Q8NHS2 421 aaPredicted RBP11.77□□□□□ -0.53
UPF1-208ENST00000600012 ZFP28Q8NHY6 868 aa11.77□□□□□ -0.53
UPF1-208ENST00000600012 SUN3Q8TAQ9 357 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms