RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 HNRNPCP07910 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 COX10Q12887 443 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 C6orf132Q5T0Z8 1188 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 FAM111BQ6SJ93 734 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 TMEM92Q6UXU6 159 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 ATCAYQ86WG3 371 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 MEX3DQ86XN8 651 aaKnown RBP17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 TM4SF19Q96DZ7 209 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 RIPOR3Q96MK2 946 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 OR2A5Q96R48 311 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 MROQ9BYG7 248 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 MMP27Q9H306 513 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 ANKHQ9HCJ1 492 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 TVP23BQ9NYZ1 205 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 KCMF1Q9P0J7 381 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 CLEC2DQ9UHP7 191 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 DAPK2Q9UIK4 370 aa17.39■□□□□ 0.37
PRPF40B-208ENST00000548436 ARHGAP33O14559 1287 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ASNA1O43681 348 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 NDUFV2P19404 249 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 HNRNPA2B1P22626 353 aaKnown RBP17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 OXA1LQ15070 435 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SSX1Q16384 188 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 INAVAQ3KP66 663 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 MFSD4BQ5TF39 518 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ACSM5Q6NUN0 579 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 CLIP4Q8N3C7 705 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 OR7G2Q8NG99 324 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ZCCHC10Q8TBK6 192 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SLC22A18Q96BI1 424 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SLC35A4Q96G79 324 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TRNT1Q96Q11 434 aaKnown RBP17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 CDADC1Q9BWV3 514 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ACTRT3Q9BYD9 372 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TWSG1Q9GZX9 223 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TMEM74BQ9NUR3 256 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 GIN1Q9NXP7 522 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 LSM2Q9Y333 95 aaKnown RBP17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 A0A087WUU8 490 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 KPNA4O00629 521 aaPredicted RBP17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ALPPP05187 535 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SLC35G6P0C7Q6 338 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SMIM10L1P0DMW3 83 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 CKMT1AP12532 417 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 UGT2B7P16662 529 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TNFRSF17Q02223 184 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ZNF91Q05481 1191 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 GINS1Q14691 196 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 KIR2DS3Q14952 304 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TBC1D25Q3MII6 688 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 MEDAGQ5VYS4 303 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 FCRL6Q6DN72 434 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TRIM69Q86WT6 500 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 KIF18BQ86Y91 864 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 LINC00471Q8N535 108 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SIMC1Q8NDZ2 872 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SMIM10Q96HG1 83 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 OPALINQ96PE5 141 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 ARHGDIGQ99819 225 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TAPBPLQ9BX59 468 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 TSSK6Q9BXA6 273 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 NXF2Q9GZY0 626 aaKnown RBP17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 KLHL25Q9H0H3 589 aa17.38■□□□□ 0.37
PRPF40B-208ENST00000548436 SYT5O00445 386 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 TLX2O43763 284 aaPredicted RBP17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 FCMRO60667 390 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 NTN1O95631 604 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 POLR2CP19387 275 aaPredicted RBP17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 CPN2P22792 545 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 CSTF2P33240 577 aaKnown RBP eCLIP17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 GIPRP48546 466 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 TPMTP51580 245 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 PDX1P52945 283 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 SRP54P61011 504 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 RUNX2Q13950 521 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 NCF4Q15080 339 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 OCLNQ16625 522 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 NDUFA9Q16795 377 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 ALG11Q2TAA5 492 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 TRIM16LQ309B1 348 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 DEFB134Q4QY38 66 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 ENTPD8Q5MY95 495 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 OR4N5Q8IXE1 308 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 SLC16A11Q8NCK7 471 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 KBTBD8Q8NFY9 601 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 COL26A1Q96A83 441 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 TMEM80Q96HE8 168 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 DOLKQ9UPQ8 538 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 LIPT1Q9Y234 373 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 RPL36Q9Y3U8 105 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 PIAS3Q9Y6X2 628 aa17.37■□□□□ 0.37
PRPF40B-208ENST00000548436 CCRL2O00421 344 aa17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 TNFSF14O43557 240 aa17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 CSO75390 466 aaKnown RBP17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 PCYT1AP49585 367 aa17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 BCAP31P51572 246 aa17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 TAS2R41P59536 307 aa17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 RPS3AP61247 264 aaKnown RBP17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 CDK5Q00535 292 aa17.36■□□□□ 0.37
PRPF40B-208ENST00000548436 RHAGQ02094 409 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms