RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ARCN1P48444 511 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CEBPGP53567 150 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 RGS8P57771 180 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 GABARAPL2P60520 117 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 POU6F2P78424 691 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TIAL1Q01085 375 aaKnown RBP eCLIP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 MS4A13Q5J8X5 152 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF691Q5VV52 312 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 LIN54Q6MZP7 749 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 HSDL2Q6YN16 418 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TMEM184AQ6ZMB5 413 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 PAQR9Q6ZVX9 377 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 MTSS1LQ765P7 747 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 NAGSQ8N159 534 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 NATD1Q8N6N6 113 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 LMNTD1Q8N9Z9 388 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 OR51G2Q8NGK0 314 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 C9orf43Q8TAL5 461 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 APIPQ96GX9 242 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TMEM80Q96HE8 168 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 LRR1Q96L50 414 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ACBD6Q9BR61 282 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 GTPBP2Q9BX10 602 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SMOC2Q9H3U7 446 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SLC32A1Q9H598 525 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 DCAF13Q9NV06 445 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CORO2BQ9UQ03 480 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 POLHQ9Y253 713 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TRPV2Q9Y5S1 764 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 F5P12259 2224 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 DAPL1A0PJW8 107 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 FAM227AF5H4B4 570 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 J3QLW9 94 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 FXYD1O00168 92 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SSX4O60224 188 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF623O75123 536 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 PCDH8O95206 1070 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 PROS1P07225 676 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 H1F0P07305 194 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 FGF4P08620 206 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF19P17023 458 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 DDCP20711 480 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 EIF2DP41214 584 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SSR2P43308 183 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 HTR3AP46098 478 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ANXA11P50995 505 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 DAPP51397 102 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SMIM11AP58511 58 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TAS2R50P59544 299 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ISL1P61371 349 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 GRSF1Q12849 480 aaKnown RBP eCLIP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF791Q3KP31 576 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 LAIR2Q6ISS4 152 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CNIH2Q6PI25 160 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 Q6ZSR9 355 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 BHLHA9Q7RTU4 235 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 COMMD7Q86VX2 200 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 FTMTQ8N4E7 242 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 RAB42Q8N4Z0 105 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 FAM46DQ8NEK8 389 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SCRN2Q96FV2 425 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CACNG6Q9BXT2 260 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CDCP1Q9H5V8 836 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 NTN4Q9HB63 628 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SLC35C2Q9NQQ7 365 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZCCHC3Q9NUD5 404 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 C5AR2Q9P296 337 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SEC14L4Q9UDX3 406 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ENTPD4Q9Y227 616 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 TRIM64A6NGJ6 449 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 J3KTA2 159 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 ACSL4O60488 711 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 B4GALT3O60512 393 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 FMO6PO60774 539 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 DNAJB5O75953 348 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 ECDO95905 644 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 CYP17A1P05093 508 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 POU2F2P09086 479 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 FDXRP22570 491 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 ACSL1P33121 698 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 ACVR1BP36896 505 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 PIK3CBP42338 1070 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 MAGEA2P43356 314 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 ASMTP46597 345 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 OMPP47874 163 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 GDI2P50395 445 aaKnown RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 VSX2P58304 361 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 IFITM3Q01628 133 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 NTRK2Q16620 822 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 NXNL2Q5VZ03 156 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 IL20RBQ6UXL0 311 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 GET4Q7L5D6 327 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 TMED4Q7Z7H5 227 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 SPACA3Q8IXA5 215 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 FAM109AQ8N4B1 249 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 FAM98AQ8NCA5 519 aaKnown RBP5.18□□□□□ -1.58
LIMA1-203ENST00000547825 RHEBL1Q8TAI7 183 aa5.18□□□□□ -1.58
LIMA1-203ENST00000547825 SNX33Q8WV41 574 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms