RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 RUNX2Q13950 521 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 SHBQ15464 509 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 ATAD3BQ5T9A4 648 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 SLC48A1Q6P1K1 146 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 CCDC71Q8IV32 467 aaPredicted RBP16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 CSNK1A1LQ8N752 337 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 MCFD2Q8NI22 146 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 IPCEF1Q8WWN9 437 aaPredicted RBP16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 KLHL6Q8WZ60 621 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 AMDHD1Q96NU7 426 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 ERVMER34-1Q9H9K5 563 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 KRT84Q9NSB2 600 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 ACSS1Q9NUB1 689 aaPredicted RBP16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 KCMF1Q9P0J7 381 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 KIF17Q9P2E2 1029 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 LRIT1Q9P2V4 623 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 RNF215Q9Y6U7 377 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 PCDH15Q96QU1 1955 aa16.06■□□□□ 0.16
PCDHB17P-201ENST00000539533 BDP1A6H8Y1 2624 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 GIMD1P0DJR0 217 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 ALOX12P18054 663 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 AQP1P29972 269 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 FEN1P39748 380 aaKnown RBP16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 NCBP2P52298 156 aaKnown RBP eCLIP16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 VEZF1Q14119 521 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 PROX2Q3B8N5 592 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 AHSA2Q719I0 299 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 ABHD13Q7L211 337 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 AKAP14Q86UN6 197 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 LACC1Q8IV20 430 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 CCDC116Q8IYX3 515 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 UBE2FQ969M7 185 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 BBS4Q96RK4 519 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 SERINC2Q96SA4 455 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 CCDC3Q9BQI4 270 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 SPATA9Q9BWV2 254 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 NEUROD4Q9HD90 331 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 LYARQ9NX58 379 aaKnown RBP16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 SAMHD1Q9Y3Z3 626 aaKnown RBP16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 RHPN2P1A8MT19 583 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 WBP4O75554 376 aaKnown RBP16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 KRT75O95678 551 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 SEMG1P04279 462 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 LIM2P55344 173 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 VLDLRP98155 873 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 IFITM2Q01629 132 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 CDC20Q12834 499 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 VTCN1Q7Z7D3 282 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 C1orf210Q8IVY1 113 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 ATG16L2Q8NAA4 619 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 TGM7Q96PF1 710 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 SIGLEC11Q96RL6 698 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 ELF4Q99607 663 aaPredicted RBP16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 DCSTAMPQ9H295 470 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 CPNE5Q9HCH3 593 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 FSCN3Q9NQT6 498 aa16.05■□□□□ 0.16
PCDHB17P-201ENST00000539533 CACNA1EQ15878 2313 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 HRO43593 1189 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 GCM2O75603 506 aaPredicted RBP16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 UPK1BO75841 260 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 NR4A2P43354 598 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 PRIM2P49643 509 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SLC13A2Q13183 592 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 MLC1Q15049 377 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 C6orf132Q5T0Z8 1188 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 MFSD4BQ5TF39 518 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 UBE2UQ5VVX9 321 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 C6orf120Q7Z4R8 191 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SLC35F3Q8IY50 421 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 ZNF655Q8N720 491 aaPredicted RBP16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 C11orf65Q8NCR3 313 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SUN3Q8TAQ9 357 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SP140LQ9H930 580 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 ABCB10Q9NRK6 738 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 RPS6KA6Q9UK32 745 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 DAPP1Q9UN19 280 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 ISPDA4D126 451 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 B3GALT2O43825 422 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 PCDHGA12O60330 932 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 NR2F6P10588 404 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 GNSP15586 552 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 CCT3P49368 545 aaKnown RBP16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 CLK1P49759 484 aaKnown RBP16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 CRYBA2P53672 197 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SPDYE7PQ495Y7 208 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 PLK5Q496M5 336 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 GCNT6Q5T4J0 391 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SAXO2Q658L1 398 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 VASH1Q7L8A9 365 aaPredicted RBP16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 LYSMD2Q8IV50 215 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 MCATQ8IVS2 390 aaKnown RBP16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 CLIP4Q8N3C7 705 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 OR5T3Q8NGG3 340 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 HTRA1Q92743 480 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 SLC38A4Q969I6 547 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 NEURL3Q96EH8 262 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 DHRS1Q96LJ7 313 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 PITX2Q99697 317 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 ITPAQ9BY32 194 aa16.04■□□□□ 0.16
PCDHB17P-201ENST00000539533 ROGDIQ9GZN7 287 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms