RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 BHLHB9Q6PI77 547 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 TMEM64Q6YI46 380 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 GALNTL5Q7Z4T8 443 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 BCORP1Q8N888 145 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 POGLUT1Q8NBL1 392 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 PSD4Q8NDX1 1056 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 NUP43Q8NFH3 380 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 SFXN5Q8TD22 340 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 SNRNP40Q96DI7 357 aaKnown RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 SECISBP2Q96T21 854 aaKnown RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 EBF4Q9BQW3 602 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 ANKRA2Q9H9E1 313 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 KLHL1Q9NR64 748 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 TMEM45AQ9NWC5 275 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 CNIH4Q9P003 139 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 TRIM33Q9UPN9 1127 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 DTX4Q9Y2E6 619 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 ABCB7O75027 752 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 C6orf47O95873 294 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 P04436 131 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 PGRP06401 933 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 EFNA1P20827 205 aaPredicted RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 ABCD3P28288 659 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 CCT3P49368 545 aaKnown RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 PRKAG1P54619 331 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 MLLT10P55197 1068 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 NME5P56597 212 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 WNT3P56703 355 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 TLE1Q04724 770 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 ZNF155Q12901 538 aaPredicted RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 FAM174BQ3ZCQ3 159 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 CYP27C1Q4G0S4 372 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 SPANXN4Q5MJ08 99 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 METTL21CQ5VZV1 264 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 OR4F3Q6IEY1 312 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 FAM180AQ6UWF9 173 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 NUP54Q7Z3B4 507 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 MDGA2Q7Z553 956 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 SLC34A3Q8N130 599 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 CDRT4Q8N9R6 151 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 OR56A1Q8NGH5 318 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 PAQR8Q8TEZ7 354 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 NUDT8Q8WV74 236 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 TEX37Q96LM6 180 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 MS4A4EQ96PG1 132 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 BARD1Q99728 777 aaKnown RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 LMF2Q9BU23 707 aaKnown RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 SH2D2AQ9NP31 389 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 NPHS2Q9NP85 383 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 SIRT3Q9NTG7 399 aaPredicted RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 SACM1LQ9NTJ5 587 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 BTNL2Q9UIR0 455 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 DCTN4Q9UJW0 460 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 MRTO4Q9UKD2 239 aaKnown RBP13.15□□□□□ -0.3
NUP54-216ENST00000514901 SNX8Q9Y5X2 465 aa13.15□□□□□ -0.3
NUP54-216ENST00000514901 ASPDHA6ND91 283 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 PEX1O43933 1283 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 SCN2BO60939 215 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 PPM1BO75688 479 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 ABCB1P08183 1280 aaPredicted RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 KRT16P08779 473 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 CNR1P21554 472 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 IL12AP29459 219 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 KRT20P35900 424 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 PRIM2P49643 509 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 ATP4BP51164 291 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 HBA1P69905 142 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 MRPS22P82650 360 aaKnown RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 PLCXD2Q0VAA5 305 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 SPDYE7PQ495Y7 208 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 TBCELQ5QJ74 424 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 MSANTD1Q6ZTZ1 278 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 SLC44A2Q8IWA5 706 aaPredicted RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 SULF2Q8IWU5 870 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 FAM13CQ8NE31 585 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 GRHL3Q8TE85 626 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 FAR1Q8WVX9 515 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 HOXB13Q92826 284 aaPredicted RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 OMA1Q96E52 524 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 FAM120BQ96EK7 910 aaKnown RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 RILPQ96NA2 401 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 OR52E6Q96RD3 313 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 HES7Q9BYE0 225 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 RABEP2Q9H5N1 569 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 Q9N2J8 555 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 ZCCHC3Q9NUD5 404 aaKnown RBP13.14□□□□□ -0.31
NUP54-216ENST00000514901 MRGBPQ9NV56 204 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 FGFR1OP2Q9NVK5 253 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 MAP10Q9P2G4 905 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 OR10H1Q9Y4A9 318 aa13.14□□□□□ -0.31
NUP54-216ENST00000514901 NINQ8N4C6 2090 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 A0A0G2JND7 137 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 FAM234BA2RU67 622 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 ANKRD33BA6NCL7 494 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 OR6C70A6NIJ9 312 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 REM1O75628 298 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 MAP3K8P41279 467 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 POLR2JP52435 117 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms