RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RAB8AP61006 207 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ACTR1AP61163 376 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 BTN3A2P78410 334 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 FUT5Q11128 374 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ST3GAL3Q11203 375 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 MED22Q15528 200 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 FAM214AQ32MH5 1076 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 EIPR1Q53HC9 387 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ZNF311Q5JNZ3 666 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ENTPD8Q5MY95 495 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 EOGTQ5NDL2 527 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 TMEM236Q5W0B7 351 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 C19orf48Q6RUI8 117 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 CYP4Z2PQ8N1L4 340 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 FAM26EQ8N5C1 309 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 OR4E2Q8NGC2 313 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 OR4D11Q8NGI4 311 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 TEX47Q8TBZ9 253 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ADAMTS15Q8TE58 950 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 OR1E3Q8WZA6 343 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 RSC1A1Q92681 617 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 RPL3LQ92901 407 aaKnown RBP11.26□□□□□ -0.61
NUP54-202ENST00000502850 ZNF681Q96N22 645 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 NECTIN4Q96NY8 510 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 POLR2J2Q9GZM3 115 aaKnown RBP11.26□□□□□ -0.61
NUP54-202ENST00000502850 TWSG1Q9GZX9 223 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 NXF2Q9GZY0 626 aaKnown RBP11.26□□□□□ -0.61
NUP54-202ENST00000502850 KCNK12Q9HB15 430 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ZBTB20Q9HC78 741 aaPredicted RBP11.26□□□□□ -0.61
NUP54-202ENST00000502850 TRPV5Q9NQA5 729 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 SCHIP1Q9P0W5 487 aaPredicted RBP11.26□□□□□ -0.61
NUP54-202ENST00000502850 PTGFRNQ9P2B2 879 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 SEC14L4Q9UDX3 406 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ENTPD2Q9Y5L3 495 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 PEX16Q9Y5Y5 336 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 FAM86C2PA6NEL3 165 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 FAM227AF5H4B4 570 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 AP3D1O14617 1153 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 MYL12BO14950 172 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 MAGEB3O15480 346 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 SEMA7AO75326 666 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 SCG5P05408 212 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 HSMCR30P0CW71 290 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 BMP4P12644 408 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 ENDOUP21128 410 aaKnown RBP11.25□□□□□ -0.61
NUP54-202ENST00000502850 CPN2P22792 545 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 FEN1P39748 380 aaKnown RBP11.25□□□□□ -0.61
NUP54-202ENST00000502850 MC3RP41968 323 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 PCYT1AP49585 367 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 ZNF45Q02386 682 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 PIN1Q13526 163 aaPredicted RBP11.25□□□□□ -0.61
NUP54-202ENST00000502850 KRR1Q13601 381 aaKnown RBP11.25□□□□□ -0.61
NUP54-202ENST00000502850 OXA1LQ15070 435 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 ZNF181Q2M3W8 571 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 KLHL22Q53GT1 634 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 C18orf63Q68DL7 685 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 CDC73Q6P1J9 531 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 RBM45Q8IUH3 476 aaKnown RBP11.25□□□□□ -0.61
NUP54-202ENST00000502850 LACC1Q8IV20 430 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 TRIM48Q8IWZ4 208 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 MORN4Q8NDC4 146 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 OR6T1Q8NGN1 323 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 OR9A2Q8NGT5 310 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 SLC38A2Q96QD8 506 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 S1PR5Q9H228 398 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 EVA1AQ9H8M9 152 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 PMF1-BGLAPU3KQ54 211 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 COL4A2P08572 1712 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 NINQ8N4C6 2090 aa11.25□□□□□ -0.61
NUP54-202ENST00000502850 LOC100506127A0A0U1RQW1 187 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 POM121BA6NF01 834 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 BTN3A3O00478 584 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZSCAN9O15535 394 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 PRKRAO75569 313 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 MED26O95402 600 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 SOX14O95416 240 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 RAB36O95755 333 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 EGFP01133 1207 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 CCNYL3P0C7X3 344 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZNF888P0CJ79 500 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 DBTP11182 482 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 CDH3P22223 829 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 MAN2A2P49641 1150 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 BCAP31P51572 246 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZNF91Q05481 1191 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PRKCDQ05655 676 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ILF3Q12906 894 aaKnown RBP eCLIP11.24□□□□□ -0.615e-6■■□□□ 11.7
NUP54-202ENST00000502850 HTR4Q13639 388 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 INAVAQ3KP66 663 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PRRT3Q5FWE3 981 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 MANEAQ5SRI9 462 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 HEPHL1Q6MZM0 1159 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 RRM2BQ7LG56 351 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 VN1R4Q7Z5H5 301 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 IQCHQ86VS3 1027 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 FAM20CQ8IXL6 584 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PROKR2Q8NFJ6 384 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 OR4K14Q8NGD5 310 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PIGXQ8TBF5 258 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 UCN3Q969E3 161 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms