RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 DHRS11Q6UWP2 260 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 COX8CQ7Z4L0 72 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 NET1Q7Z628 596 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 KLHL7Q8IXQ5 586 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 LRRC34Q8IZ02 419 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 RASL10AQ92737 203 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 EFHD2Q96C19 240 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 TGS1Q96RS0 853 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 CGREF1Q99674 301 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 ALKBH7Q9BT30 221 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 PUS3Q9BZE2 481 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 OSBPL8Q9BZF1 889 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 DRC3Q9H069 523 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 UBQLN3Q9H347 655 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 GPN1Q9HCN4 374 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 MRPL40Q9NQ50 206 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 THAP10Q9P2Z0 257 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 POMT2Q9UKY4 750 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 BARX2Q9UMQ3 279 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 EXOC7Q9UPT5 735 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 L3MBTL1Q9Y468 752 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 ADGRA3Q8IWK6 1321 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 LRP5O75197 1615 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 ARAP2Q8WZ64 1704 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 RREB1Q92766 1687 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 CICQ96RK0 1608 aaPredicted RBP4.84□□□□□ -1.63
USP40-213ENST00000483216 UMODL1Q5DID0 1318 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 A0A087WWV3 80 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 ARHGEF37A1IGU5 675 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 TCP11X1B4DZS4 312 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 ZNF701M0R085 212 aaPredicted RBP4.84□□□□□ -1.63
USP40-213ENST00000483216 TM9SF1O15321 606 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 CALUO43852 315 aaPredicted RBP4.84□□□□□ -1.63
USP40-213ENST00000483216 TNFAIP8O95379 198 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 LBPP18428 481 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 ADORA1P30542 326 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 SSTR1P30872 391 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 HOXC13P31276 330 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 PRKCIP41743 596 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 OR3A3P47888 321 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 ADARP55265 1226 aaKnown RBP4.84□□□□□ -1.63
USP40-213ENST00000483216 ERVK-16P61578 105 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 NOP14P78316 857 aaKnown RBP4.84□□□□□ -1.63
USP40-213ENST00000483216 PSMD6Q15008 389 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 MS4A18Q3C1V0 323 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 TNFAIP8L3Q5GJ75 292 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 DUPD1Q68J44 220 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 OR52E8Q6IFG1 317 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 ALKBH5Q6P6C2 394 aaKnown RBP4.84□□□□□ -1.63
USP40-213ENST00000483216 MACC1Q6ZN28 852 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 LRRC74BQ6ZQY2 392 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 METTL23Q86XA0 190 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 NUP93Q8N1F7 819 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 MINDY2Q8NBR6 621 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 ICA1LQ8NDH6 482 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 C17orf47Q8NEP4 570 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 RAB3IL1Q8TBN0 382 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 SGF29Q96ES7 293 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 EPSTI1Q96J88 318 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 C1orf21Q9H246 121 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 DPH5Q9H2P9 285 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 C8orf4Q9NR00 106 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 AGPAT5Q9NUQ2 364 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 GIN1Q9NXP7 522 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 CTSZQ9UBR2 303 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 LGALS13Q9UHV8 139 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 FADS3Q9Y5Q0 445 aa4.84□□□□□ -1.63
USP40-213ENST00000483216 AKAP11Q9UKA4 1901 aa4.84□□□□□ -1.64
USP40-213ENST00000483216 MROH5Q6ZUA9 1318 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 IGHV3-20A0A0C4DH32 117 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 GSTTP1A0A1W2PQM5 241 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 SHISA7A6NL88 538 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 A8MXK9 166 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 RTCAO00442 366 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 RIPK2O43353 540 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 BUB1O43683 1085 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 SNAP91O60641 907 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 NOL3O60936 208 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 ATP9AO75110 1047 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TBCAO75347 108 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 SPAG7O75391 227 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 MTRF1O75570 445 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 IDH1O75874 414 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 IL1BP01584 269 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 IGHV3-13P01766 116 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 KRT16P08779 473 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TSPY3P0CV98 308 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TSPY8P0CW00 308 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 VDRP11473 427 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 SCG2P13521 617 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 AOC1P19801 751 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 C4BPBP20851 252 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 CRABP2P29373 138 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 GPR183P32249 361 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 PGFP49763 221 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 RAP1GDS1P52306 607 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 CBX3Q13185 183 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 PDK4Q16654 411 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TCTEX1D4Q5JR98 221 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 ZFP1Q6P2D0 407 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms