RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NR0B1P51843 470 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 AP2B1P63010 937 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 CBX1P83916 185 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PRR5P85299 388 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PSG6Q00889 435 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 LASP1Q14847 261 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 CT45A2Q5DJT8 189 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 LRIF1Q5T3J3 769 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 AGAP7PQ5VUJ5 663 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 IRAK1BP1Q5VVH5 260 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 SAXO2Q658L1 398 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 REP15Q6BDI9 236 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 LYPD8Q6UX82 237 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 DLEU7Q6UYE1 221 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 C6orf120Q7Z4R8 191 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PRR22Q8IZ63 422 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 SLC5A8Q8N695 610 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 FITM2Q8N6M3 262 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 SLC16A11Q8NCK7 471 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 OR4N2Q8NGD1 307 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 OR56A1Q8NGH5 318 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PNPT1Q8TCS8 783 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 TSPEARQ8WU66 669 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 AGAP4Q96P64 663 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 BTBD9Q96Q07 612 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 RASL10BQ96S79 203 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 SMAD5Q99717 465 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 TRIM8Q9BZR9 551 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 ANKRD10Q9NXR5 420 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PLA2G3Q9NZ20 509 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PRODH2Q9UF12 536 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 LEF1Q9UJU2 399 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 VPS4AQ9UN37 437 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 GPR55Q9Y2T6 319 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 PCDHGA9Q9Y5G4 932 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 CSAG2Q9Y5P2 127 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 KCNE3Q9Y6H6 103 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 SPENQ96T58 3664 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 GXYLT2A0PJZ3 443 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 DYTNA2CJ06 578 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 EIF4E1BA6NMX2 242 aaKnown RBP13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ANGPT2O15123 496 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 DCTN3O75935 186 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 OR6B1O95007 311 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 WDPCPO95876 746 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ZCCHC18P0CG32 403 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 PPICP45877 212 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 MAN2A2P49641 1150 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 MVDP53602 400 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 RHDQ02161 417 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 LRRC74AQ0VAA2 488 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 KCNAB2Q13303 367 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 MFAP5Q13361 173 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 CYLC2Q14093 348 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-209ENST00000469852 DUSP5Q16690 384 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 MEP1AQ16819 746 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 PIGGQ5H8A4 983 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ABHD17BQ5VST6 288 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 HLA-DQA1Q5Y7H0 255 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 DESI1Q6ICB0 168 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ISLR2Q6UXK2 745 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 DPP10Q8N608 796 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 OR5D16Q8NGK9 328 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 OR5L2Q8NGL0 311 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ZFP90Q8TF47 636 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 PIK3R3Q92569 461 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 HOXB13Q92826 284 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-209ENST00000469852 MOAP1Q96BY2 351 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 RCN3Q96D15 328 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 NEURL3Q96EH8 262 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ZNF354BQ96LW1 612 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 LRRC37BQ96QE4 947 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 PHF12Q96QT6 1004 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 LMF2Q9BU23 707 aaKnown RBP13.66□□□□□ -0.22
COL9A3-209ENST00000469852 IL1RL2Q9HB29 575 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 MRGBPQ9NV56 204 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 ARL8BQ9NVJ2 186 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 STMN3Q9NZ72 180 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 VAPAQ9P0L0 249 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 CFL2Q9Y281 166 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 TP53TG5Q9Y2B4 290 aa13.66□□□□□ -0.22
COL9A3-209ENST00000469852 HELZ2Q9BYK8 2649 aaKnown RBP13.66□□□□□ -0.22
COL9A3-209ENST00000469852 FRG2CA6NGY1 282 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 MKRN2OSH3BPM6 223 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 FXYD1O00168 92 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 MRASO14807 208 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 ATXN7O15265 892 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 KALRNO60229 2985 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 NKX2-2O95096 273 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 ANP32DO95626 131 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 ALPPP05187 535 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 DRD5P21918 477 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 CHI3L1P36222 383 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 SOX3P41225 446 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 CAPRIN1Q14444 709 aaKnown RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 MAPRE2Q15555 327 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 COX20Q5RI15 118 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 IGFL2Q6UWQ7 119 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 DHDDSQ86SQ9 333 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 ZNF227Q86WZ6 799 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms