RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 KCNJ13O60928 360 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ZIC2O95409 532 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ALOX5P09917 674 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 LAMP2P13473 410 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 NTSR1P30989 418 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ANXA11P50995 505 aaKnown RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 PRR5P85299 388 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 MLLT1Q03111 559 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 COX10Q12887 443 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 TIMM50Q3ZCQ8 353 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 C6orf132Q5T0Z8 1188 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 TUBA3EQ6PEY2 450 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ENPP7Q6UWV6 458 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 CD300LDQ6UXZ3 194 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 PRICKLE2Q7Z3G6 844 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 FAM26EQ8N5C1 309 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 NANOGP1Q8N7R0 232 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 SIMC1Q8NDZ2 872 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 SRFBP1Q8NEF9 429 aaKnown RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 OR1E3Q8WZA6 343 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 HTRA1Q92743 480 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 COL26A1Q96A83 441 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ELSPBP1Q96BH3 223 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 TRMT61AQ96FX7 289 aaKnown RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 SCARF2Q96GP6 870 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 TRNT1Q96Q11 434 aaKnown RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 OR2M4Q96R27 311 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 C1QTNF7Q9BXJ2 289 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 PINK1Q9BXM7 581 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 POLDIP3Q9BY77 421 aaKnown RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 POLR2J2Q9GZM3 115 aaKnown RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 NUAK2Q9H093 628 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF624Q9P2J8 865 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 SNX7Q9UNH6 387 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 NTNG1Q9Y2I2 539 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 COLEC10Q9Y6Z7 277 aa8.4□□□□□ -1.07
SYNE1-217ENST00000466159 ARHGEF17Q96PE2 2063 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-217ENST00000466159 TICRRQ7Z2Z1 1910 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 A0A1W2PQF6 199 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CPSF4LA6NMK7 179 aaKnown RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CASC3O15234 703 aaKnown RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 DNAJB6O75190 326 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 APOL3O95236 402 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF888P0CJ79 500 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 TRHRP34981 398 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SOX6P35712 828 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 RPS19P39019 145 aaKnown RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 TNFRSF4P43489 277 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 LBX1P52954 281 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 TAS2R41P59536 307 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 STXBP1P61764 594 aaKnown RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CDK5Q00535 292 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF45Q02386 682 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 PRKCDQ05655 676 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 TGM3Q08188 693 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 MAP4K2Q12851 820 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 GNA13Q14344 377 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SHHQ15465 462 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SNAPC1Q16533 368 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ENTPD8Q5MY95 495 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 C1QTNF12Q5T7M4 302 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 AGAP7PQ5VUJ5 663 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ANKRD54Q6NXT1 300 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 FAM111BQ6SJ93 734 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 PAQR7Q86WK9 346 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 POC5Q8NA72 575 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 IL17RCQ8NAC3 791 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 OR52I1Q8NGK6 324 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 TSACCQ96A04 125 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 FAM131CQ96AQ9 280 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 MOAP1Q96BY2 351 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 GIMAP5Q96F15 307 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF582Q96NG8 517 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-217ENST00000466159 MND1Q9BWT6 205 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 C3orf14Q9HBI5 128 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SEMA4GQ9NTN9 838 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 GIMAP4Q9NUV9 329 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 GIN1Q9NXP7 522 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CNIH4Q9P003 139 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 GPR52Q9Y2T5 361 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 PEX16Q9Y5Y5 336 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF780BQ9Y6R6 833 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CYP7B1O75881 506 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ALPPP05187 535 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ALOX12P18054 663 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ETV5P41161 510 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CRYBB2P43320 205 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 AVPR1BP47901 424 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ETV1P50549 477 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 PDX1P52945 283 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 EFNB1P98172 346 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CBX3Q13185 183 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CEBPEQ15744 281 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF181Q2M3W8 571 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 LIPKQ5VXJ0 399 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 FBXO42Q6P3S6 717 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 MTSS1LQ765P7 747 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 NRROSQ86YC3 692 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 OR4N5Q8IXE1 308 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms