RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PPICP45877 212 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 CLK3P49761 638 aaKnown RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 SLC7A2P52569 658 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 EEFSECP57772 596 aaKnown RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 MTPNP58546 118 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 POU6F2P78424 691 aaPredicted RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 RBBP4Q09028 425 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 MGAT2Q10469 447 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 GAB1Q13480 694 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 MEP1AQ16819 746 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ZNF630Q2M218 657 aaPredicted RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 GPAT3Q53EU6 434 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 DCAF10Q5QP82 559 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.38□□□□□ -0.91
CD44-207ENST00000425428 MFSD12Q6NUT3 480 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 TNFAIP8L2Q6P589 184 aaPredicted RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 SERPINA11Q86U17 422 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 IFNEQ86WN2 208 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 KRT73Q86Y46 540 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 SLC44A2Q8IWA5 706 aaPredicted RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 DND1Q8IYX4 353 aaKnown RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 C11orf65Q8NCR3 313 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 C17orf47Q8NEP4 570 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 OR10A6Q8NH74 314 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 DOK4Q8TEW6 326 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ZCCHC14Q8WYQ9 949 aaKnown RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 THOC3Q96J01 351 aaKnown RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 IMMP1LQ96LU5 166 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ZNF354BQ96LW1 612 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 YIPF4Q9BSR8 244 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 THTPAQ9BU02 230 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 SPATA5L1Q9BVQ7 753 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 NUDT9Q9BW91 350 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 SEMA4CQ9C0C4 833 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 LHPPQ9H008 270 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 OR51I1Q9H343 314 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 PIGUQ9H490 435 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ALG2Q9H553 416 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 SLAMF8Q9P0V8 285 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ANGPT4Q9Y264 503 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ZNF451Q9Y4E5 1061 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 CLDN16Q9Y5I7 305 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 URB1O60287 2271 aaKnown RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 FRG2CA6NGY1 282 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ARGFXA6NJG6 315 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 EFSO43281 561 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 PDE9AO76083 593 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 IGKV3-11P04433 115 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 OR12D1P0DN82 309 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 T-ENOLP0DO92 83 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 GPX2P18283 190 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 NR0B1P51843 470 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 CRISP3P54108 245 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 FOXK2Q01167 660 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 CYP27C1Q4G0S4 372 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 LACTB2Q53H82 288 aaPredicted RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 FHL5Q5TD97 284 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ABHD17BQ5VST6 288 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 OPN5Q6U736 354 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 DGAT2L6Q6ZPD8 337 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 RINLQ6ZS11 566 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SPACA3Q8IXA5 215 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SHISA5Q8N114 240 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 LGI4Q8N135 537 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 CLEC4FQ8N1N0 589 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 TMEM156Q8N614 296 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SLC15A4Q8N697 577 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ZNF615Q8N8J6 731 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 NFAM1Q8NET5 270 aaPredicted RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 OR2T12Q8NG77 320 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 MIPOL1Q8TD10 442 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SLC26A7Q8TE54 656 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ADAMTS17Q8TE56 1095 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 GATA6Q92908 595 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 AURKBQ96GD4 344 aaPredicted RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 OR7D2Q96RA2 312 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ZNF607Q96SK3 696 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 CPPED1Q9BRF8 314 aaPredicted RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 SLC39A3Q9BRY0 314 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 LMF2Q9BU23 707 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 BTBD2Q9BX70 525 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 TRIM15Q9C019 465 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 WWTR1Q9GZV5 400 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ARMC7Q9H6L4 198 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 HHATLQ9HCP6 504 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 TAS2R1Q9NYW7 299 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SLC25A37Q9NYZ2 338 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 CBLCQ9ULV8 474 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 GMEB1Q9Y692 573 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 CDK2AP1O14519 115 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 NKX2-8O15522 239 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SLC28A2O43868 658 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SERPINB7O75635 380 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ME2P23368 584 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 RFX3P48380 749 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 EMDP50402 254 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 GPR143P51810 404 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 LIPEQ05469 1076 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 PLCXD2Q0VAA5 305 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 DEFB109BQ30KR1 87 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms