RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR1F2PQ96R84 312 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 CSF3RQ99062 836 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 TRIM4Q9C037 500 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 TGIF2Q9GZN2 237 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 SLC26A1Q9H2B4 701 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 TEX10Q9NXF1 929 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-204ENST00000409441 C3orf18Q9UK00 162 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 ERVK-11Q9UQG0 969 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 OR2W5A6NFC9 320 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 WASHC1A8K0Z3 465 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 CNOT3O75175 753 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 E2F6O75461 281 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 CDC123O75794 336 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FHP07954 510 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 CD63P08962 238 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ZGLP1P0C6A0 271 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 LIPCP11150 499 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 BUD31P41223 144 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RAD23AP54725 363 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FADDQ13158 208 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ELOAQ14241 798 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 NCF4Q15080 339 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RGNQ15493 299 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 NDUFAF5Q5TEU4 345 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 OR2T5Q6IEZ7 315 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FAM198BQ6UWH4 519 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 SHISA6Q6ZSJ9 500 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ZC3H7AQ8IWR0 971 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 PRSS58Q8IYP2 241 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 C11orf65Q8NCR3 313 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 OR2T29Q8NH02 315 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 UCN3Q969E3 161 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 NRBF2Q96F24 287 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FAIM2Q9BWQ8 316 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RBCK1Q9BYM8 510 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 TOR3AQ9H497 397 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 WDR54Q9H977 334 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 UTS2RQ9UKP6 389 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FARSAQ9Y285 508 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ORC6Q9Y5N6 252 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 SDK2Q58EX2 2172 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 AKAP13Q12802 2813 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 NUP214P35658 2090 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 CACNA1AO00555 2505 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 LOC101059948A0A1B0GTJ6 334 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 GLOD5A6NK44 160 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 CLDN4O14493 209 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 PGRMC2O15173 223 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 PRKRAO75569 313 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 KLF7O75840 302 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 AIFM1O95831 613 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FABP3P05413 133 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 IL3P08700 152 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RAB40ALP0C0E4 278 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 DRD2P14416 443 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 DLSTP36957 453 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 HLCSP50747 726 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RPS6KA3P51812 740 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ARHGDIAP52565 204 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FOXL2P58012 376 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ESRRGP62508 458 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RPS15P62841 145 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 MC1RQ01726 317 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ROR2Q01974 943 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 TNFRSF17Q02223 184 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 IL18R1Q13478 541 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 GAB1Q13480 694 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 HEPACAMQ14CZ8 416 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 RBM48Q5RL73 367 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 B3GNT6Q6ZMB0 384 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 MED25Q71SY5 747 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 THAP5Q7Z6K1 395 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 TMEM151BQ8IW70 566 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 OFCC1Q8IZS5 231 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 C8orf59Q8N0T1 100 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 MMP21Q8N119 569 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 TMEM52Q8NDY8 209 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 OR52N2Q8NGI0 321 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ADAMTS18Q8TE60 1221 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF764Q96H86 408 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 GPR87Q9BY21 358 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 SOX17Q9H6I2 414 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 LANCL2Q9NS86 450 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 DDX18Q9NVP1 670 aaKnown RBP12.55□□□□□ -0.4
LIMS1-204ENST00000409441 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 FAM118AQ9NWS6 357 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 ADPRHL2Q9NX46 363 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 BAG5Q9UL15 447 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 CEPT1Q9Y6K0 416 aa12.55□□□□□ -0.4
LIMS1-204ENST00000409441 AHCTF1Q8WYP5 2266 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 ENO4A6NNW6 628 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 C21orf140B9A014 251 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 SEC24DO94855 1032 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 KRT75O95678 551 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 NR2F6P10588 404 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 ITGAMP11215 1152 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 F8A1P23610 371 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 TTKP33981 857 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 ALDH9A1P49189 494 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 IST1P53990 364 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms