RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 REP15Q6BDI9 236 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 HSDL2Q6YN16 418 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 LRRC74BQ6ZQY2 392 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 SIAH3Q8IW03 269 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ARHGAP24Q8N264 748 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 SLC5A8Q8N695 610 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 NUP43Q8NFH3 380 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 POP5Q969H6 163 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 RBM18Q96H35 190 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 RILPQ96NA2 401 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 UCN2Q96RP3 112 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 OLAHQ9NV23 265 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 VPS4AQ9UN37 437 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 LIPT1Q9Y234 373 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 PCDHB14Q9Y5E9 798 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 C15orf38-AP3S2A0A0A6YYH1 394 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 CCDC154A6NI56 674 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 DUXAA6NLW8 204 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 DYRK3O43781 588 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ZIC2O95409 532 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ARAFP10398 606 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 COX4I1P13073 169 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 MC3RP41968 323 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 STX1BP61266 288 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 STX5Q13190 355 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 VEZF1Q14119 521 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ST3GAL2Q16842 350 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 KLHL26Q53HC5 615 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 RNF220Q5VTB9 566 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ARPINQ7Z6K5 226 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 YTHDF3Q7Z739 585 aaKnown RBP6.47□□□□□ -1.37
LIMA1-202ENST00000394943 CCDC116Q8IYX3 515 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 AGR3Q8TD06 166 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 INPP5KQ9BT40 448 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 HOXD1Q9GZZ0 328 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 IRAK4Q9NWZ3 460 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 ERVK-19Q9WJR5 959 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 PCDHGB3Q9Y5G1 929 aa6.47□□□□□ -1.37
LIMA1-202ENST00000394943 KRT75O95678 551 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 C8BP07358 591 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 THBS1P07996 1170 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 HSD17B1P14061 328 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 ENDOUP21128 410 aaKnown RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 TNFSF10P50591 281 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 GYS2P54840 703 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 MRPS22P82650 360 aaKnown RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 PLAURQ03405 335 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 FOXO1Q12778 655 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 ACER2Q5QJU3 275 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 GKAP1Q5VSY0 366 aaPredicted RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 AGAP7PQ5VUJ5 663 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 SLC30A6Q6NXT4 461 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 DHRS4L2Q6PKH6 230 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 ASB18Q6ZVZ8 466 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 PTOV1Q86YD1 416 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 MISPQ8IVT2 679 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 CLECL1Q8IZS7 167 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 FITM2Q8N6M3 262 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 TRIML2Q8N7C3 387 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 CLEC1AQ8NC01 280 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 FDCSPQ8NFU4 85 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 OR9I1Q8NGQ6 314 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 PNPLA2Q96AD5 504 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM125Q96AQ2 219 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 EXOSC8Q96B26 276 aaKnown RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 C8orf44Q96CB5 159 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 AGAP4Q96P64 663 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 OR52E6Q96RD3 313 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 ELAC2Q9BQ52 826 aaKnown RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 POLR2J2Q9GZM3 115 aaKnown RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 POLR2J3Q9H1A7 115 aaKnown RBP6.46□□□□□ -1.37
LIMA1-202ENST00000394943 COPS7AQ9UBW8 275 aa6.46□□□□□ -1.37
LIMA1-202ENST00000394943 NDUFAB1O14561 156 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 IGF2P01344 180 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 IGKV1D-16P01601 117 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 IGHG3P01860 377 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 PDGFAP04085 211 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 FEN1P39748 380 aaKnown RBP6.46□□□□□ -1.38
LIMA1-202ENST00000394943 CCT3P49368 545 aaKnown RBP6.46□□□□□ -1.38
LIMA1-202ENST00000394943 SUMO3P55854 103 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-202ENST00000394943 KCNK10P57789 538 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 FOXL2P58012 376 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 RGNQ15493 299 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 SLC2A7Q6PXP3 512 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 OPN5Q6U736 354 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 RTL4Q6ZR62 310 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 Q8NA96 180 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 CCDC197Q8NCU1 140 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 SLC22A8Q8TCC7 542 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 BRIX1Q8TDN6 353 aaKnown RBP6.46□□□□□ -1.38
LIMA1-202ENST00000394943 CMTM5Q96DZ9 223 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 SPACA9Q96E40 222 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-202ENST00000394943 CGREF1Q99674 301 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 UBQLN3Q9H347 655 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 CLCA3PQ9Y6N3 262 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 DOCK10Q96BY6 2186 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 SPEGQ15772 3267 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 A0A0G2JND7 137 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 TRBV11-1A0A0K0K1C0 115 aa6.46□□□□□ -1.38
LIMA1-202ENST00000394943 OR5H15A6NDH6 313 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms