RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TVP23BQ9NYZ1 205 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CAB39Q9Y376 341 aaPredicted RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 KIAA0513O60268 411 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 CTSVO60911 334 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 SERPINB10P48595 397 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 KHKP50053 298 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 UGT2B15P54855 530 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 MAP4K2Q12851 820 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 TRIM16LQ309B1 348 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 GPAT3Q53EU6 434 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 USP43Q70EL4 1123 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 PRICKLE2Q7Z3G6 844 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 OR4N5Q8IXE1 308 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 TMEFF1Q8IYR6 380 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 CRELD1Q96HD1 420 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 A0A087WUU8 490 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 CENPVL1A0A0U1RR11 272 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 KLF8O95600 359 aaPredicted RBP12.56□□□□□ -0.4
CCDC3-202ENST00000378839 PIPP12273 146 aaPredicted RBP12.56□□□□□ -0.4
CCDC3-202ENST00000378839 ACSL1P33121 698 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 FBXO43Q4G163 708 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM184AQ6ZMB5 413 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 OR7G2Q8NG99 324 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 OR8D4Q8NGM9 314 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 OR2M4Q96R27 311 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 RAB11FIP5Q9BXF6 653 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 MIR1-1HGQ9H1L0 117 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 SEMA4GQ9NTN9 838 aa12.56□□□□□ -0.4
CCDC3-202ENST00000378839 AGAP5A6NIR3 686 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 CACNB4O00305 520 aaPredicted RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 TLX2O43763 284 aaPredicted RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 APOL3O95236 402 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 DDX5P17844 614 aaKnown RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 TGM4P49221 684 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 PDX1P52945 283 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 TUBA1BP68363 451 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 ABATP80404 500 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 TJAP1Q5JTD0 557 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 TUBA1AQ71U36 451 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 NUP43Q8NFH3 380 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 BBS10Q8TAM1 723 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 LCN9Q8WX39 176 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 PPP1R14BQ96C90 147 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SLC35A4Q96G79 324 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 FNDC11Q9BVV2 318 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 TSSK6Q9BXA6 273 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 KCMF1Q9P0J7 381 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 MPZL2O60487 215 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 PTNP21246 168 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 MLLT1Q03111 559 aaPredicted RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SLC13A2Q13183 592 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 C1orf94Q6P1W5 598 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 CADM3Q8N126 398 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SFXN5Q8TD22 340 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 PATE1Q8WXA2 126 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 MMP27Q9H306 513 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 MRPS2Q9Y399 296 aaKnown RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 KLK4Q9Y5K2 254 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 A6NCN8 305 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 CNOT3O75175 753 aaKnown RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 FHP07954 510 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 HOXB2P14652 356 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 PPP5CP53041 499 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 RAB15P59190 212 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 OLR1P78380 273 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 CDK5Q00535 292 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 DBPQ10586 325 aaPredicted RBP12.55□□□□□ -0.4
CCDC3-202ENST00000378839 RUNX2Q13950 521 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 GINS1Q14691 196 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SYT14P1Q58G82 188 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SLC22A16Q86VW1 577 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SLC16A11Q8NCK7 471 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 RASSF5Q8WWW0 418 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 PRRC1Q96M27 445 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 BARHL1Q9BZE3 327 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 MARCH7Q9H992 704 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 SIAEQ9HAT2 523 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 CARD8Q9Y2G2 431 aa12.55□□□□□ -0.4
CCDC3-202ENST00000378839 LOC105369274A0A096LPK9 316 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 LOC102723532A0A0G2JNH3 316 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 KPNA4O00629 521 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 SPNP16150 400 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CSNK2A2P19784 350 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 GTF2E2P29084 291 aaKnown RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CMPK1P30085 196 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 GIPRP48546 466 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 PPP2R2DQ66LE6 453 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 FCRL6Q6DN72 434 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CD300LDQ6UXZ3 194 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 PRSS41Q7RTY9 318 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 C11orf74Q86VG3 221 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 NRROSQ86YC3 692 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 LYSMD2Q8IV50 215 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 OR4N4Q8N0Y3 316 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 SLC34A3Q8N130 599 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 PARP16Q8N5Y8 322 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 OR2A14Q96R47 310 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 GAS2L1Q99501 681 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ZSCAN32Q9NX65 697 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CNIH4Q9P003 139 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms