RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 ACADLP28330 430 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 SMSP52788 366 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 LASP1Q14847 261 aaKnown RBP13.21□□□□□ -0.29
USH1C-201ENST00000005226 TEAD2Q15562 447 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 RNLSQ5VYX0 342 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 LAMTOR1Q6IAA8 161 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 FAM92BQ6ZTR7 304 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 KRT78Q8N1N4 520 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 TMEM163Q8TC26 289 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 ARMC5Q96C12 935 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 QRFPRQ96P65 431 aa13.21□□□□□ -0.29
USH1C-201ENST00000005226 MYO10Q9HD67 2058 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 LANCL1O43813 399 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 EVX1P49640 407 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 P2RX3P56373 397 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 DEFB103AP81534 67 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 SMUG1Q53HV7 270 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 C1orf94Q6P1W5 598 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 PRR23CQ6ZRP0 262 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 ADCK2Q7Z695 626 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 UBE3DQ7Z6J8 389 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 C17orf64Q86WR6 236 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 DNAJC5GQ8N7S2 189 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 GALNT6Q8NCL4 622 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 OR5H6Q8NGV6 325 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 SMAD5Q99717 465 aaKnown RBP13.2□□□□□ -0.3
USH1C-201ENST00000005226 ARHGAP9Q9BRR9 750 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 MS4A8Q9BY19 250 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 RNF32Q9H0A6 362 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 EQTNQ9NQ60 294 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 SPHK2Q9NRA0 654 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 AHSPQ9NZD4 102 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 P2RX2Q9UBL9 471 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 ZC3H12DA2A288 527 aaKnown RBP13.2□□□□□ -0.3
USH1C-201ENST00000005226 FAM183AA6NL82 134 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 FAM170BA6NMN3 283 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 STK25O00506 426 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 PRODHO43272 600 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 TPD52L2O43399 206 aaKnown RBP13.2□□□□□ -0.3
USH1C-201ENST00000005226 OR1F1O43749 312 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 OR2B3O76000 313 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 RB1P06400 928 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 GNSP15586 552 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 INPP1P49441 399 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 SMIM11AP58511 58 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 ABATP80404 500 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 DUSP2Q05923 314 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 FUT5Q11128 374 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 SLC27A4Q6P1M0 643 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 SLC36A4Q6YBV0 504 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 NEIL3Q8TAT5 605 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 AP3S1Q92572 193 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 DTD2Q96FN9 168 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 C17orf62Q9BQA9 187 aa13.2□□□□□ -0.3
USH1C-201ENST00000005226 MTCL1Q9Y4B5 1905 aaKnown RBP13.2□□□□□ -0.3
USH1C-201ENST00000005226 GABRPO00591 440 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ALDH1A1P00352 501 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 PAHP00439 452 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 FAM157BP0CG42 384 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 PRKAR1AP10644 381 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ERP29P30040 261 aaKnown RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 GABRA5P31644 462 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NNMTP40261 264 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SLC1A3P43003 542 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NCBP2P52298 156 aaKnown RBP eCLIP13.19□□□□□ -0.3
USH1C-201ENST00000005226 PPP3R1P63098 170 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 CSTF1Q05048 431 aaKnown RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 ZNF155Q12901 538 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 PIP5KL1Q5T9C9 394 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NR2C2APQ86WQ0 139 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 VRK2Q86Y07 508 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 KLBQ86Z14 1044 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 BMPERQ8N8U9 685 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 PLA2G15Q8NCC3 412 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 FBXO15Q8NCQ5 510 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 OR4M2Q8NGB6 313 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 GRPEL2Q8TAA5 225 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TEX47Q8TBZ9 253 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SPRYD4Q8WW59 207 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 UBE2E3Q969T4 207 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TBX5Q99593 518 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SOSTQ9BQB4 213 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TMEM43Q9BTV4 400 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 DPH7Q9BTV6 452 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ISG20L2Q9H9L3 353 aaKnown RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 HMX1Q9NP08 348 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 FGF20Q9NP95 211 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 CSNK1G3Q9Y6M4 447 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 DNAH14Q0VDD8 3507 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NUMA1Q14980 2115 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 PGRMC2O15173 223 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ELK1P19419 428 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 GPR4P46093 362 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 CDH11P55287 796 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TAS2R41P59536 307 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ARPC4P59998 168 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NTHL1P78549 312 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 RAB40BQ12829 278 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 COX10Q12887 443 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 CCDC116Q8IYX3 515 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms