RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZNF781Q8N8C0 355 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 OR7G2Q8NG99 324 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 OR10G3Q8NGC4 313 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 CDC26Q8NHZ8 85 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 MTERF3Q96E29 417 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 HSPBAP1Q96EW2 488 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 AMDHD1Q96NU7 426 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 TSPAN10Q9H1Z9 355 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-213ENST00000598355 GLIPR2Q9H4G4 154 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 REEP4Q9H6H4 257 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 ZNF395Q9H8N7 513 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-213ENST00000598355 CNIH4Q9P003 139 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 PRODH2Q9UF12 536 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 NPIPA1Q9UND3 350 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 OSGIN2Q9Y236 505 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 RAP2CQ9Y3L5 183 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 WDR91A4D1P6 747 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 FRG2CA6NGY1 282 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 TFECO14948 347 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-213ENST00000598355 SKAP2O75563 359 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-213ENST00000598355 HSPA4LO95757 839 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 P04436 131 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 H2AFXP16104 143 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-213ENST00000598355 BGNP21810 368 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 DRD5P21918 477 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 NTSP30990 170 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 RFC3P40938 356 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 CA7P43166 264 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 PPICP45877 212 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 ASMTP46597 345 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 MAGOHP61326 146 aaKnown RBP14.84□□□□□ -0.03
TRIM28-213ENST00000598355 SMU1Q2TAY7 513 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 GALNTL6Q49A17 601 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 HLA-DQA1Q5Y7H0 255 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 SLC22A10Q63ZE4 541 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 RGS9BPQ6ZS82 235 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 FGD2Q7Z6J4 655 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 OR2L13Q8N349 312 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 PPP1R14CQ8TAE6 165 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 KAT2AQ92830 837 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 ZBTB9Q96C00 473 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 LCORQ96JN0 433 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-213ENST00000598355 TSSK3Q96PN8 268 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 BBS4Q96RK4 519 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 TTTY12Q9BZ98 90 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 ANKRA2Q9H9E1 313 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 KCNK9Q9NPC2 374 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 PFDN4Q9NQP4 134 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 ASIC5Q9NY37 505 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 GIMAP2Q9UG22 337 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 BCAP29Q9UHQ4 241 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 GPR55Q9Y2T6 319 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-213ENST00000598355 CACNA1CQ13936 2221 aa14.84□□□□□ -0.03
TRIM28-213ENST00000598355 ATP6AP2A0A1C7CYW4 349 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 LRRC3CA6NJW4 275 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 CAPN14A8MX76 684 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 HS6ST1O60243 411 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 SLC19A2O60779 497 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 SNNO75324 88 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 ATP6AP2O75787 350 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 CT45A8P0DMV1 189 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 CT45A9P0DMV2 189 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 MAPK1P28482 360 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 SLC1A6P48664 564 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 DNASE1L1P49184 302 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 NCBP2P52298 156 aaKnown RBP eCLIP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 NRG3P56975 720 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 C21orf58P58505 322 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 PSPHP78330 225 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 BST1Q10588 318 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 ATP6AP1LQ52LC2 224 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 CT45A2Q5DJT8 189 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 TBCELQ5QJ74 424 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 AGBL2Q5U5Z8 902 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 TMEM64Q6YI46 380 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 FAM47EQ6ZV65 393 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 FAM13CQ8NE31 585 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 SPPL2AQ8TCT8 520 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 RNF138Q8WVD3 245 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 HOXB13Q92826 284 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 HGDQ93099 445 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 ZNF703Q9H7S9 590 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 IL1RL2Q9HB29 575 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 TUBA8Q9NY65 449 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 ATP6V1HQ9UI12 483 aa14.83□□□□□ -0.04
TRIM28-213ENST00000598355 C19orf53Q9UNZ5 99 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 UTP20O75691 2785 aaKnown RBP14.83□□□□□ -0.04
TRIM28-213ENST00000598355 A0A1B0GUH1 482 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 G3V3Y1 287 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 ACOT7O00154 380 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 UPK1AO00322 258 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 SCAMP2O15127 329 aaKnown RBP14.82□□□□□ -0.04
TRIM28-213ENST00000598355 PDPK1O15530 556 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 PEX11AO75192 247 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 COQ9O75208 318 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 PPM1BO75688 479 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 IGHG3P01860 377 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 ABCB1P08183 1280 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-213ENST00000598355 PIGAP37287 484 aa14.82□□□□□ -0.04
TRIM28-213ENST00000598355 MC3RP41968 323 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms