RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CCDC187A0A096LP49 1063 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 TNFRSF10AO00220 468 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 GREM1O60565 184 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 BCL6P41182 706 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 ZSWIM7Q19AV6 140 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 RAET1LQ5VY80 246 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 HSH2DQ96JZ2 352 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 CLK4Q9HAZ1 481 aaKnown RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 BTNL2Q9UIR0 455 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 ERGIC3Q9Y282 383 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 CDC14CA4D256 554 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 OR7A17O14581 309 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 NOBOXO60393 691 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 RENP00797 406 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 DBIP07108 87 aaKnown RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 POU2F1P14859 743 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 TNFRSF17Q02223 184 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 FOXC1Q12948 553 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 UGT3A2Q3SY77 523 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 CRB2Q5IJ48 1285 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 KIAA1614Q5VZ46 1190 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 SLC30A6Q6NXT4 461 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 FAM180BQ6P0A1 224 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 TMEM207Q6UWW9 146 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 OR5K1Q8NHB7 308 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 BAHD1Q8TBE0 780 aaPredicted RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 PNPLA2Q96AD5 504 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 PYURFQ96I23 114 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 S100A13Q99584 98 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 ZNF717Q9BY31 904 aaPredicted RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 TRBV11-1A0A0K0K1C0 115 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 CENPXA8MT69 81 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TAPBPO15533 448 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 CSO75390 466 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 AIFM1O95831 613 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 ZNF823P16415 610 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 GSTM3P21266 225 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TSFMP43897 325 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 BCAP31P51572 246 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 RPS3AP61247 264 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 MESP2Q0VG99 397 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 FAM180AQ6UWF9 173 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 NCCRP1Q6ZVX7 275 aaPredicted RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 OAFQ86UD1 273 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 RNF175Q8N4F7 328 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 OR10G2Q8NGC3 310 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 LRRC46Q96FV0 321 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TRAPPC9Q96Q05 1148 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 SORT1Q99523 831 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 MAPKAP1Q9BPZ7 522 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TWSG1Q9GZX9 223 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 C1orf21Q9H246 121 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 MTHFD2LQ9H903 347 aaPredicted RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 B3GAT2Q9NPZ5 323 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 IKZF2Q9UKS7 526 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 NPIPA7E9PJI5 369 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 RNASET2O00584 256 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 RCBTB2O95199 551 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TNFAIP8O95379 198 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 HMGN1P05114 100 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 NPIPA8P0DM63 369 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 THRBP10828 461 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 CCL7P80098 99 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 B4GALNT1Q00973 533 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 FOLH1Q04609 750 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 RAPSNQ13702 412 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TRAM2Q15035 370 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 OR2T5Q6IEZ7 315 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 ABHD17CQ6PCB6 329 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 LGI4Q8N135 537 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 OR2T29Q8NH02 315 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 GPBAR1Q8TDU6 330 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 ARPC5LQ9BPX5 153 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 FAM86C1Q9NVL1 165 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 SLC7A8Q9UHI5 535 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 IGLV3-16A0A075B6K0 115 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 CPSF4LA6NMK7 179 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 TNFSF15O95150 251 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 GFERP55789 205 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 DCAF7P61962 342 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 EIF3IQ13347 325 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 PMS2CLQ68D20 193 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TMEM214Q6NUQ4 689 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 PAPD4Q6PIY7 484 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 BMP8AQ7Z5Y6 402 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 LOXL4Q96JB6 756 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 CCDC74BQ96LY2 380 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 SLC6A16Q9GZN6 736 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 DENND2DQ9H6A0 471 aaPredicted RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 TIMMDC1Q9NPL8 285 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 EHD3Q9NZN3 535 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 USP36Q9P275 1121 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 MKLN1Q9UL63 735 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TRIM3O75382 744 aaPredicted RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 APOL3O95236 402 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 MYF5P13349 255 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 MAGEA12P43365 314 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 CSNK2BP67870 215 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 TRA2AQ13595 282 aaKnown RBP eCLIP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms