RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 IKBIPQ70UQ0 350 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 MRGPRGQ86SM5 289 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 CD163Q86VB7 1156 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 DDIASQ8IXT1 998 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 CLYBLQ8N0X4 340 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 ZNF808Q8N4W9 903 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-206ENST00000579558 SPPL2AQ8TCT8 520 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 TWIST2Q8WVJ9 160 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 ERP27Q96DN0 273 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 JSRP1Q96MG2 331 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-206ENST00000579558 ZFP64Q9NPA5 681 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 TRAF6Q9Y4K3 522 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 LIPGQ9Y5X9 500 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 EXPH5Q8NEV8 1989 aa21.96■■□□□ 1.11
SHMT1-206ENST00000579558 ZNF407Q9C0G0 2248 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 CTIFO43310 598 aaKnown RBP21.95■■□□□ 1.1
SHMT1-206ENST00000579558 SERPINB5P36952 375 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 ETV4P43268 484 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 DCAF7P61962 342 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 RPP38P78345 283 aaKnown RBP21.95■■□□□ 1.1
SHMT1-206ENST00000579558 ADORA2A-AS1P86434 159 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 PRSS53Q2L4Q9 553 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 SH2D4BQ5SQS7 431 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 CEP85LQ5SZL2 805 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 EID3Q8N140 333 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 AGR3Q8TD06 166 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 HSPBAP1Q96EW2 488 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 SECISBP2Q96T21 854 aaKnown RBP21.95■■□□□ 1.1
SHMT1-206ENST00000579558 CENPHQ9H3R5 247 aa21.95■■□□□ 1.1
SHMT1-206ENST00000579558 EXO1Q9UQ84 846 aaKnown RBP21.95■■□□□ 1.1
SHMT1-206ENST00000579558 ANKRD33BA6NCL7 494 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 LRRC3CA6NJW4 275 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 MYO1GB0I1T2 1018 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 ACOX3O15254 700 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 PPM1BO75688 479 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 IGHG3P01860 377 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 JUNP05412 331 aaKnown RBP21.94■■□□□ 1.1
SHMT1-206ENST00000579558 CELA3AP09093 270 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 NAGAP17050 411 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 TACR1P25103 407 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 NTSP30990 170 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 PPICP45877 212 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 NCBP2P52298 156 aaKnown RBP eCLIP21.94■■□□□ 1.11e-6■■□□□ 14.2
SHMT1-206ENST00000579558 SMSP52788 366 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 RPL38P63173 70 aaKnown RBP21.94■■□□□ 1.1
SHMT1-206ENST00000579558 PLCXD2Q0VAA5 305 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 SLC10A1Q14973 349 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 BICRALQ6AI39 1079 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 OMA1Q96E52 524 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 EGLN2Q96KS0 407 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 ZNF597Q96LX8 424 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 ZIM3Q96PE6 472 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 LDAHQ9H6V9 325 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 ZNF703Q9H7S9 590 aaPredicted RBP21.94■■□□□ 1.1
SHMT1-206ENST00000579558 TAS2R7Q9NYW3 318 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 NINQ8N4C6 2090 aa21.94■■□□□ 1.1
SHMT1-206ENST00000579558 FRG2CA6NGY1 282 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 E9PLN8 166 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 PIP5K1BO14986 540 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 LSM1O15116 133 aaKnown RBP21.93■■□□□ 1.1
SHMT1-206ENST00000579558 ABCB1P08183 1280 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-206ENST00000579558 DRD5P21918 477 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 UGT3A2Q3SY77 523 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 TMEM198Q66K66 360 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 NCCRP1Q6ZVX7 275 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-206ENST00000579558 TRILQ7L0X0 811 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 EXOC3L1Q86VI1 746 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 NUDCD3Q8IVD9 361 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 OR7G2Q8NG99 324 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 PPP1R14CQ8TAE6 165 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 ZBTB9Q96C00 473 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 FCRL1Q96LA6 429 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 RILPQ96NA2 401 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 CCT7Q99832 543 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 VKORC1Q9BQB6 163 aa21.93■■□□□ 1.1
SHMT1-206ENST00000579558 DNAJC13O75165 2243 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 NPIPA2E9PIF3 369 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 NPIPA3F8WFD2 350 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 ADAM10O14672 748 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 PLOD3O60568 738 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 TRIM3O75382 744 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 RFPL3SP0C7P2 107 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 ARRB2P32121 409 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 SERPINB4P48594 390 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 ART3Q13508 389 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 GALNTL6Q49A17 601 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 RFTN2Q52LD8 501 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 XKRXQ6PP77 449 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 SLC34A3Q8N130 599 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 PHF10Q8WUB8 498 aaKnown RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 GFM2Q969S9 779 aaKnown RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 PKNOX2Q96KN3 472 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 BTBD9Q96Q07 612 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 DMRTA2Q96SC8 542 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 ANGPTL4Q9BY76 406 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 STMN4Q9H169 189 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 EXO5Q9H790 373 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 FOLH1BQ9HBA9 442 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 SSU72Q9NP77 194 aaKnown RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 B4GALT7Q9UBV7 327 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms