RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TCTN3Q6NUS6 607 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 MFSD12Q6NUT3 480 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 C8orf82Q6P1X6 216 aaPredicted RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 SNX32Q86XE0 403 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 KBTBD2Q8IY47 623 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 NATD1Q8N6N6 113 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 SIRT6Q8N6T7 355 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 POU5F2Q8N7G0 328 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 EXD3Q8N9H8 876 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 C7orf57Q8NEG2 295 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 OR7G1Q8NGA0 311 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 FBXO27Q8NI29 283 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 NUBPLQ8TB37 319 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 SFXN5Q8TD22 340 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 TSPEARQ8WU66 669 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 AURKBQ96GD4 344 aaPredicted RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 C16orf58Q96GQ5 468 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 FER1L6-AS2Q96M78 137 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 BTBD9Q96Q07 612 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 LMF2Q9BU23 707 aaKnown RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 ITPAQ9BY32 194 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 LHPPQ9H008 270 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 NXF5Q9H1B4 397 aaKnown RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 FOLH1BQ9HBA9 442 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 GIMAP4Q9NUV9 329 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 PTGFRNQ9P2B2 879 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 PCDHB14Q9Y5E9 798 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 CSAG2Q9Y5P2 127 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 HEMK1Q9Y5R4 338 aaPredicted RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 KCNE3Q9Y6H6 103 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 FREM3P0C091 2139 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 A0A096LPI6 279 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 OR6C76A6NM76 312 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 CFLARO15519 480 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 EMC8O43402 210 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ZIC2O95409 532 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 CPSF4O95639 269 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 IGKV1D-16P01601 117 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ABCB1P08183 1280 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 SNRPB2P08579 225 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 T-ENOLP0DO92 83 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 COX4I1P13073 169 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 TRPC1P48995 793 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 CCT3P49368 545 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 CCL11P51671 97 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 CLCN2P51788 898 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 RRADP55042 308 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 STX1BP61266 288 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 RPS26P62854 115 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 FUT5Q11128 374 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 SELPLGQ14242 412 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ACER2Q5QJU3 275 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 COX20Q5RI15 118 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ANXA8L1Q5VT79 327 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 DESI1Q6ICB0 168 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 JMJD6Q6NYC1 403 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 BORAQ6PGQ7 559 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 DNAJC14Q6Y2X3 702 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 HSDL2Q6YN16 418 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 RNF111Q6ZNA4 994 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 LGI4Q8N135 537 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 CLEC1AQ8NC01 280 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 SLC16A11Q8NCK7 471 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 C17orf47Q8NEP4 570 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 OR4N2Q8NGD1 307 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 OR5AK3PQ8NH89 298 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ZFP28Q8NHY6 868 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 MIPOL1Q8TD10 442 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 BCAS4Q8TDM0 211 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ZFP90Q8TF47 636 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 THAP3Q8WTV1 239 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 RNF138Q8WVD3 245 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 APOBEC4Q8WW27 367 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 NEURL3Q96EH8 262 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 PRPF18Q99633 342 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 SMAD5Q99717 465 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 RSPO3Q9BXY4 272 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 TRIM8Q9BZR9 551 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 TRIM45Q9H8W5 580 aaPredicted RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 NEUROD4Q9HD90 331 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 ARL8BQ9NVJ2 186 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 FBXO34Q9NWN3 711 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 VAPAQ9P0L0 249 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 MYOTQ9UBF9 498 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 PCDHGA9Q9Y5G4 932 aaKnown RBP8.59□□□□□ -1.03
VPS35-211ENST00000569950 CAPN7Q9Y6W3 813 aa8.59□□□□□ -1.03
VPS35-211ENST00000569950 NBASA2RRP1 2371 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 HEATR5AQ86XA9 2040 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 GXYLT2A0PJZ3 443 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 DYTNA2CJ06 578 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 CCDC154A6NI56 674 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 A6NL46 340 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 B4DXG7 233 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 TO15178 435 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 PRAMEF2O60811 474 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 CCDC22O60826 627 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 OR2J2O76002 312 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ZFAND5O76080 213 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 NKX2-2O95096 273 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 UNC5CO95185 931 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms