RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TMEM156Q8N614 296 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 OR9I1Q8NGQ6 314 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 ASB15Q8WXK1 588 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 VSTM2LQ96N03 204 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 BHLHE41Q9C0J9 482 aaPredicted RBP18.05■□□□□ 0.48
CLN3-225ENST00000566824 CXorf36Q9H7Y0 433 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 FOLH1BQ9HBA9 442 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 TRAV17A0A0B4J275 112 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 POLR3GO15318 223 aaPredicted RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 VIMP08670 466 aaKnown RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 GPC1P35052 558 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 PMP22Q01453 160 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 ZNF791Q3KP31 576 aaPredicted RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 FAM174BQ3ZCQ3 159 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 PDCD4Q53EL6 469 aaKnown RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 ZNF766Q5HY98 468 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 PRICKLE2Q7Z3G6 844 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 ANKRD46Q86W74 232 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 CYP4Z2PQ8N1L4 340 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 CLEC4FQ8N1N0 589 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 CISD2Q8N5K1 135 aaKnown RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 ZFP28Q8NHY6 868 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 TP53INP1Q96A56 240 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 TESCQ96BS2 214 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 ERP27Q96DN0 273 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 SCMH1Q96GD3 660 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 PRPF18Q99633 342 aaKnown RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 CCDC28BQ9BUN5 200 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 ATAD3AQ9NVI7 634 aa18.04■□□□□ 0.48
CLN3-225ENST00000566824 DDX18Q9NVP1 670 aaKnown RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 GPR55Q9Y2T6 319 aaPredicted RBP18.04■□□□□ 0.48
CLN3-225ENST00000566824 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 A0A0G2JMM0 328 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 A0A1W2PPB8 328 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 A0A1W2PRS3 328 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 KIR3DP1A8MWS1 328 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 SLC25A12O75746 678 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 C1QCP02747 245 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 SP1P08047 785 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 ABCB1P08183 1280 aaPredicted RBP18.03■□□□□ 0.48
CLN3-225ENST00000566824 CT45A8P0DMV1 189 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 CT45A9P0DMV2 189 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 IDO1P14902 403 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 HBA1P69905 142 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 MLC1Q15049 377 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 CT45A2Q5DJT8 189 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 HLA-DQA1Q5Y7H0 255 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 PAOXQ6QHF9 649 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 OR4N2Q8NGD1 307 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 OR8J2Q8NGG1 315 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 OR5P2Q8WZ92 322 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 GIMAP5Q96F15 307 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 C16orf58Q96GQ5 468 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 ZNF317Q96PQ6 595 aaPredicted RBP18.03■□□□□ 0.48
CLN3-225ENST00000566824 TAAR6Q96RI8 345 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 EQTNQ9NQ60 294 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 SDR39U1Q9NRG7 319 aaPredicted RBP18.03■□□□□ 0.48
CLN3-225ENST00000566824 NINQ8N4C6 2090 aa18.03■□□□□ 0.48
CLN3-225ENST00000566824 A0A0G2JND7 137 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 TTLL8A6PVC2 850 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 A8MVJ9 347 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 G3V3Y1 287 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 PYCARD-AS1I3L0S3 204 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 SLC22A3O75751 556 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 BCAS2O75934 225 aaPredicted RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 WISP2O76076 250 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 FBXO45P0C2W1 286 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 KIR3DL1P43629 444 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 PPICP45877 212 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 CLNS1AP54105 237 aaKnown RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 PRKAG1P54619 331 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 C19orf57Q0VDD7 668 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 ZNF155Q12901 538 aaPredicted RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 RPS6KA2Q15349 733 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 GSTA3Q16772 222 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 SLC25A25Q6KCM7 469 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 GALNTL5Q7Z4T8 443 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 NUP43Q8NFH3 380 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 OR5M3Q8NGP4 307 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 PSMA8Q8TAA3 256 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 SLC22A8Q8TCC7 542 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 SNRNP40Q96DI7 357 aaKnown RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 FAM120BQ96EK7 910 aaKnown RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 OTUB1Q96FW1 271 aaPredicted RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 LCORQ96JN0 433 aaPredicted RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 BTBD9Q96Q07 612 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 DEPPQ9NTK1 212 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 HPF1Q9NWY4 346 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 NTMQ9P121 344 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 PRODH2Q9UF12 536 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 NPFFR2Q9Y5X5 522 aa18.02■□□□□ 0.48
CLN3-225ENST00000566824 COPG1Q9Y678 874 aaKnown RBP18.02■□□□□ 0.48
CLN3-225ENST00000566824 PINLYPA6NC86 204 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 NME2P1O60361 137 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 ERN1O75460 977 aaKnown RBP18.01■□□□□ 0.47
CLN3-225ENST00000566824 SLITRK5O94991 958 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 CCL3P10147 92 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 DRD5P21918 477 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 NME2P22392 152 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 ABCD3P28288 659 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms