RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ACANP16112 2415 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 PRRC2AP48634 2157 aaKnown RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 MBD3L4A6NDZ8 208 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 MBD3L3A6NE82 208 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 MBD3L5A6NJ08 208 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 A6NNC1 897 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 RHOXF2BP0C7M4 288 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 KRT15P19012 456 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 DEKP35659 375 aaKnown RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 FEN1P39748 380 aaKnown RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 PTGDSP41222 190 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 NAGLUP54802 743 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 TRA2BP62995 288 aaKnown RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 DUSP2Q05923 314 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 EXOSC7Q15024 291 aaKnown RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 DAZAP2Q15038 168 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 FLYWCH1Q4VC44 716 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 MMGT1Q8N4V1 131 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 SIMC1Q8NDZ2 872 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 FAM83FQ8NEG4 500 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 OR1J4Q8NGS1 313 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 MBD3L2Q8NHZ7 208 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 SELENOMQ8WWX9 145 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 ABTB1Q969K4 478 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 BRINP2Q9C0B6 783 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 CLEC4MQ9H2X3 399 aaPredicted RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 METTL7AQ9H8H3 244 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 NMRK1Q9NWW6 199 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 JKAMPQ9P055 326 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 TRPS1Q9UHF7 1281 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 DMGDHQ9UI17 866 aaKnown RBP15.62■□□□□ 0.09
CLN3-216ENST00000565316 SNX6Q9UNH7 406 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 CAMK2AQ9UQM7 478 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 EXPH5Q8NEV8 1989 aa15.62■□□□□ 0.09
CLN3-216ENST00000565316 ABCA4P78363 2273 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 A8MT66 165 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 TRIM49D1C9J1S8 452 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 GNB5O14775 395 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 SNPHO15079 494 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 TO15178 435 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 ICOSLGO75144 302 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 ERAL1O75616 437 aaKnown RBP15.61■□□□□ 0.09
CLN3-216ENST00000565316 IL18BPO95998 194 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 ACTL6AO96019 429 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 DRD5P21918 477 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 PPICP45877 212 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 EMDP50402 254 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 CDH13P55290 713 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 DCAF7P61962 342 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 WIPI1Q5MNZ9 446 aaPredicted RBP15.61■□□□□ 0.09
CLN3-216ENST00000565316 DESI1Q6ICB0 168 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 ANGPTL8Q6UXH0 198 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 ZPLD1Q8TCW7 415 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 OMA1Q96E52 524 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 CNRIP1Q96F85 164 aaPredicted RBP15.61■□□□□ 0.09
CLN3-216ENST00000565316 NODALQ96S42 347 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 LIME1Q9H400 295 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 CCM2LQ9NUG4 571 aaPredicted RBP15.61■□□□□ 0.09
CLN3-216ENST00000565316 BCAP29Q9UHQ4 241 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 CBLCQ9ULV8 474 aa15.61■□□□□ 0.09
CLN3-216ENST00000565316 VPS13CQ709C8 3753 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 HSD3B1P14060 373 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 CPN1P15169 458 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 TSPAN8P19075 237 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 CTSSP25774 331 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 HSD3B2P26439 372 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 ECHS1P30084 290 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 HSD17B3P37058 310 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 PLCXD2Q0VAA5 305 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 TOMM20Q15388 145 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 NNATQ16517 81 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 WHAMMP3Q1A5X7 153 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 TRMT12Q53H54 448 aaKnown RBP15.6■□□□□ 0.09
CLN3-216ENST00000565316 YRDCQ86U90 279 aaKnown RBP15.6■□□□□ 0.09
CLN3-216ENST00000565316 CDC20BQ86Y33 519 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 C1orf52Q8N6N3 182 aaKnown RBP15.6■□□□□ 0.09
CLN3-216ENST00000565316 WDSUB1Q8N9V3 476 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 ADCY4Q8NFM4 1077 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 OR52R1Q8NGF1 315 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 ZNF675Q8TD23 568 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 KLHL29Q96CT2 875 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 TRIB1Q96RU8 372 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 FMO2Q99518 471 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 FAIM2Q9BWQ8 316 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 OSBPL11Q9BXB4 747 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 OR2B2Q9GZK3 357 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 EPB41L4BQ9H329 900 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 VPS29Q9UBQ0 182 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 PRODH2Q9UF12 536 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 EXO1Q9UQ84 846 aaKnown RBP15.6■□□□□ 0.09
CLN3-216ENST00000565316 GPR55Q9Y2T6 319 aaPredicted RBP15.6■□□□□ 0.09
CLN3-216ENST00000565316 PLLPQ9Y342 182 aa15.6■□□□□ 0.09
CLN3-216ENST00000565316 FLNAP21333 2647 aaKnown RBP15.6■□□□□ 0.09
CLN3-216ENST00000565316 MANBAO00462 879 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 UGT2B11O75310 529 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 CBR3O75828 277 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 PCSK2P16519 638 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 OPRM1P35372 400 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 LTB4RQ15722 352 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 FAM219BQ5XKK7 198 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms