RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 AGR3Q8TD06 166 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 MTERF3Q96E29 417 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 ZNF764Q96H86 408 aaPredicted RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 FCRL1Q96LA6 429 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 SH2D2AQ9NP31 389 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 DEPPQ9NTK1 212 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 TAS2R9Q9NYW1 312 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 ZDHHC2Q9UIJ5 367 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 PTGDR2Q9Y5Y4 395 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 DOPEY1Q5JWR5 2465 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 A0A087WV62 115 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 ANKRD33BA6NCL7 494 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 TMEM233B4DJY2 109 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 PRRG2O14669 202 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 TBX19O60806 448 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 COQ9O75208 318 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 IFI6P09912 130 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 PCSK2P16519 638 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 SDC1P18827 310 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 RFC3P40938 356 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 CA7P43166 264 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 EMDP50402 254 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 ABCE1P61221 599 aaKnown RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 KCNJ2P63252 427 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 MRPS35P82673 323 aaKnown RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 MAD2L1Q13257 205 aaPredicted RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 HYAL4Q2M3T9 481 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 RFTN2Q52LD8 501 aaPredicted RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 HHATQ5VTY9 493 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 C1QL3Q5VWW1 255 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 TMEM198Q66K66 360 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 ARHGAP11AQ6P4F7 1023 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 Q6ZPB1 254 aaPredicted RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 NUP54Q7Z3B4 507 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 R3HCC1LQ7Z5L2 792 aaKnown RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 FJX1Q86VR8 437 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 FAM109AQ8N4B1 249 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 OR10G3Q8NGC4 313 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 OR9A2Q8NGT5 310 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 ZFP28Q8NHY6 868 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 DIO2Q92813 273 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 KAT2AQ92830 837 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 PKNOX2Q96KN3 472 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 ITPAQ9BY32 194 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 TTTY12Q9BZ98 90 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 NXF5Q9H1B4 397 aaKnown RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 REEP4Q9H6H4 257 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 ZNF835Q9Y2P0 537 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 CHCHD2Q9Y6H1 151 aaPredicted RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 PHF3Q92576 2039 aaKnown RBP12.33□□□□□ -0.44
CLK3-216ENST00000564468 NCKAP5O14513 1909 aa12.33□□□□□ -0.44
CLK3-216ENST00000564468 FRG2CA6NGY1 282 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 G3V3Y1 287 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 CCL21O00585 134 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 TO15178 435 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 PDPK1O15530 556 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 CDC40O60508 579 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLK3-216ENST00000564468 ABCB7O75027 752 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 PPM1BO75688 479 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 SNX4O95219 450 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 JUNP05412 331 aaKnown RBP12.32□□□□□ -0.44
CLK3-216ENST00000564468 ESRRAP11474 423 aaPredicted RBP12.32□□□□□ -0.44
CLK3-216ENST00000564468 PRPS2P11908 318 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 TACR1P25103 407 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 ABCD3P28288 659 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 PTGS2P35354 604 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 KRT20P35900 424 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 SLC1A6P48664 564 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 DNASE1L1P49184 302 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 SLC18A1P54219 525 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 STX3Q13277 289 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 CMPK2Q5EBM0 449 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 XKR7Q5GH72 579 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 OR5M3Q8NGP4 307 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 PPCDCQ96CD2 204 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 TUBGCP3Q96CW5 907 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 EGLN2Q96KS0 407 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 TSSK3Q96PN8 268 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 PAIP2Q9BPZ3 127 aaKnown RBP12.32□□□□□ -0.44
CLK3-216ENST00000564468 DOHHQ9BU89 302 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 ZDHHC11Q9H8X9 412 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 ZFP64Q9NPA5 681 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 QPCTLQ9NXS2 382 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 SH3BP4Q9P0V3 963 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 B4GALT7Q9UBV7 327 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 CNOT11Q9UKZ1 510 aaKnown RBP12.32□□□□□ -0.44
CLK3-216ENST00000564468 RAP2CQ9Y3L5 183 aa12.32□□□□□ -0.44
CLK3-216ENST00000564468 NCOA6Q14686 2063 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 PINLYPA6NC86 204 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 TTC36A6NLP5 189 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 FAM166BA8MTA8 275 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PLOD2O00469 737 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PEX11AO75192 247 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 ERN1O75460 977 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 SKAP2O75563 359 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 LYPLA1O75608 230 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 GLSO94925 669 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 BCKDHAP12694 445 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms