RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 LYRM4Q9HD34 91 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 CTPS2Q9NRF8 586 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 FTSJ1Q9UET6 329 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 PCDHGB1Q9Y5G3 927 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 ABCA7Q8IZY2 2146 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 METTL12A8MUP2 240 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 ASNA1O43681 348 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 FGF17O60258 216 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 ZNF10P21506 573 aaPredicted RBP17.92■□□□□ 0.46
SMPD3-203ENST00000563226 CD27P26842 260 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 TLX1P31314 330 aaPredicted RBP17.92■□□□□ 0.46
SMPD3-203ENST00000563226 PTGES3Q15185 160 aaKnown RBP17.92■□□□□ 0.46
SMPD3-203ENST00000563226 DCST1Q5T197 706 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 PTCRAQ6ISU1 281 aaPredicted RBP17.92■□□□□ 0.46
SMPD3-203ENST00000563226 USP53Q70EK8 1073 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 AHSA2Q719I0 299 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 VRK2Q86Y07 508 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 SLC7A13Q8TCU3 470 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 MS4A4EQ96PG1 132 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 SEMA6CQ9H3T2 930 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 NTMQ9P121 344 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 TMCC3Q9ULS5 477 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 DSPPQ9NZW4 1301 aa17.92■□□□□ 0.46
SMPD3-203ENST00000563226 THADAQ6YHU6 1953 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 SGK494L7N484 410 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CYR61O00622 381 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 FCMRO60667 390 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 TPST2O60704 377 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 GALR3O60755 368 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CSF2P04141 144 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 IGFBP1P08833 259 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 GABRB1P18505 474 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CHMP24386 653 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CD38P28907 300 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 PDX1P52945 283 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 GNA13Q14344 377 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 TRMT12Q53H54 448 aaKnown RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ARMC6Q6NXE6 501 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CA13Q8N1Q1 262 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 OR2L13Q8N349 312 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 AVL9Q8NBF6 648 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 RHOXF1Q8NHV9 184 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 LMX1AQ8TE12 382 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CDS1Q92903 461 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 FKBP10Q96AY3 582 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CCDC3Q9BQI4 270 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 SPATA5L1Q9BVQ7 753 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 PRR14Q9BWN1 585 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 IL21RQ9HBE5 538 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 AMBNQ9NP70 447 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 MAN2C1Q9NTJ4 1040 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 MS4A12Q9NXJ0 267 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 GIN1Q9NXP7 522 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 GPR55Q9Y2T6 319 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CHST2Q9Y4C5 530 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CEP192Q8TEP8 1941 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 SPTBP11277 2137 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 TRIM64BA6NI03 449 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ZNF99A8MXY4 864 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 FRS3O43559 492 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 RGS10O43665 173 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 OR10H3O60404 316 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ZBTB11O95625 1053 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 FADS2O95864 444 aaKnown RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 LSM11P83369 360 aaKnown RBP eCLIP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ZNF628Q5EBL2 1059 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 PRAMEF8Q5VWM4 474 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 PRAMEF7Q5VXH5 474 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 CCDC81Q6ZN84 652 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 C16orf62Q7Z3J2 963 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 RBM12BQ8IXT5 1001 aaKnown RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ARL14Q8N4G2 192 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ZNF655Q8N720 491 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 ADAMTS15Q8TE58 950 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 TRNT1Q96Q11 434 aaKnown RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 SIGLEC11Q96RL6 698 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 FUNDC2Q9BWH2 189 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 PINK1Q9BXM7 581 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 DNAAF2Q9NVR5 837 aaKnown RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 TMEM9Q9P0T7 183 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 REV1Q9UBZ9 1251 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 WARS2Q9UGM6 360 aaKnown RBP17.91■□□□□ 0.46
SMPD3-203ENST00000563226 SLC9A8Q9Y2E8 581 aa17.91■□□□□ 0.46
SMPD3-203ENST00000563226 FAAHO00519 579 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 UGT2B17O75795 530 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 NME1P15531 152 aaKnown RBP17.9■□□□□ 0.46
SMPD3-203ENST00000563226 PORP16435 677 aaPredicted RBP17.9■□□□□ 0.46
SMPD3-203ENST00000563226 CDH3P22223 829 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 NR4A1P22736 598 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 NUDT6P53370 316 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 TMBIM6P55061 237 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 ZNF311Q5JNZ3 666 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 CDC73Q6P1J9 531 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 PGBD2Q6P3X8 592 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 P3H2Q8IVL5 708 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 C19orf47Q8N9M1 422 aaKnown RBP17.9■□□□□ 0.46
SMPD3-203ENST00000563226 SLC9A6Q92581 669 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 HLA-CQ95604 372 aa17.9■□□□□ 0.46
SMPD3-203ENST00000563226 MIR1-1HGQ9H1L0 117 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms