RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PCM1Q15154 2024 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 ELOA3DA6NLF2 546 aaPredicted RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 CLDN24A6NM45 220 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 COQ9O75208 318 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 FKBP6O75344 327 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 APOL3O95236 402 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 GADD45GO95257 159 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 H6PDO95479 791 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 T-ENOLP0DO92 83 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 DRD2P14416 443 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 UQCRC2P22695 453 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 PEBP1P30086 187 aaKnown RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 SERPINB1P30740 379 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 KCNJ5P48544 419 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 PSMD4P55036 377 aaKnown RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 PCDH1Q08174 1060 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 BNIP2Q12982 314 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 PIN1Q13526 163 aaPredicted RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 VMACQ2NL98 169 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 ZXDCQ2QGD7 858 aaPredicted RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 DEFB109BQ30KR1 87 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 NDUFAF6Q330K2 333 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 ELOA3BQ3SY89 546 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 IFI44LQ53G44 452 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 CDKL4Q5MAI5 379 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 MANEAQ5SRI9 462 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 TLDC1Q6P9B6 456 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 CASP12Q6UXS9 341 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 EIF3MQ7L2H7 374 aaKnown RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 PAQR7Q86WK9 346 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 COMMD2Q86X83 199 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 HS3ST5Q8IZT8 346 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 HORMAD2Q8N7B1 307 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 ELOA3Q8NG57 546 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 SNIP1Q8TAD8 396 aaKnown RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 SLC7A6OSQ96CW6 309 aaPredicted RBP5.11□□□□□ -1.59
VPS13C-209ENST00000560637 IL4I1Q96RQ9 567 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 MCHR1Q99705 422 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 OR51V1Q9H2C8 321 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 RNPEPL1Q9HAU8 725 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 BRF2Q9HAW0 419 aa5.11□□□□□ -1.59
VPS13C-209ENST00000560637 CHD5Q8TDI0 1954 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 A0A1W2PQM1 296 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 DYTNA2CJ06 578 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 D6RAR5 112 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 FBP2O00757 339 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 YKT6O15498 198 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 GALR2O43603 387 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 PLGP00747 810 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 CXCR1P25024 350 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 RORAP35398 523 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 DPP6P42658 865 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 TRPC1P48995 793 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 PER3P56645 1201 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 TNFRSF17Q02223 184 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 CHRNEQ04844 493 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 GALNT1Q10472 559 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 SNTA1Q13424 505 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 GAB1Q13480 694 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 DCST1Q5T197 706 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 ARTNQ5T4W7 220 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 FCRL6Q6DN72 434 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 TYW3Q6IPR3 259 aaKnown RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 REEP3Q6NUK4 255 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 LRRC69Q6ZNQ3 347 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 VRK2Q86Y07 508 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 MCEMP1Q8IX19 187 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 PQLC1Q8N2U9 271 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 ESX1Q8N693 406 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 OR5M1Q8NGP8 315 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 OR52P1PQ8NH57 321 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 WDR36Q8NI36 951 aaKnown RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 NETO1Q8TDF5 533 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 SAP25Q8TEE9 199 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 DNASE2BQ8WZ79 361 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 GTF2H4Q92759 462 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 CCNL2Q96S94 520 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 KLHL4Q9C0H6 718 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 BRD7Q9NPI1 651 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 OAZ3Q9UMX2 235 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 TOR1BO14657 336 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 EI24O14681 340 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 GALR3O60755 368 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 FURINP09958 794 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 FTH1P19P0C7X4 201 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 CSF2RBP32927 897 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 KDELR2P33947 212 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 HNRNPFP52597 415 aaKnown RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 RCAN2Q14206 197 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 UGT3A2Q3SY77 523 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 C6orf52Q5T4I8 152 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 SPATC1Q76KD6 591 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 NET1Q7Z628 596 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 PATL1Q86TB9 770 aaKnown RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 CARM1Q86X55 608 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 DHRSXQ8N5I4 330 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 FAM98AQ8NCA5 519 aaKnown RBP5.1□□□□□ -1.59
VPS13C-209ENST00000560637 ASB12Q8WXK4 309 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 TMBIM1Q969X1 311 aa5.1□□□□□ -1.59
VPS13C-209ENST00000560637 CNRIP1Q96F85 164 aaPredicted RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms