RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TLE4Q04727 773 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 LCP2Q13094 533 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 PLXDC2Q6UX71 529 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 NPSR1Q6W5P4 371 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 ZYG11AQ6WRX3 759 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 ULK2Q8IYT8 1036 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 EID3Q8N140 333 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 NAXEQ8NCW5 288 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 ACMSDQ8TDX5 336 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 ASB5Q8WWX0 329 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 SARAFQ96BY9 339 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 OMA1Q96E52 524 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 ACKR4Q9NPB9 350 aa16.22■□□□□ 0.19
HDDC3-205ENST00000559898 EXO1Q9UQ84 846 aaKnown RBP16.22■□□□□ 0.19
HDDC3-205ENST00000559898 ANKRD33BA6NCL7 494 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 GOLGA6L10A6NI86 522 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 PPM1BO75688 479 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 TRAPPC6AO75865 159 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 ESRRBO95718 433 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 GSTA1P08263 222 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 HSD3B1P14060 373 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 HSD3B2P26439 372 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 TIA1P31483 386 aaKnown RBP eCLIP16.21■□□□□ 0.19
HDDC3-205ENST00000559898 CORO7P57737 925 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 TRA2BP62995 288 aaKnown RBP16.21■□□□□ 0.19
HDDC3-205ENST00000559898 CRYZQ08257 329 aaKnown RBP16.21■□□□□ 0.19
HDDC3-205ENST00000559898 WIPI1Q5MNZ9 446 aaPredicted RBP16.21■□□□□ 0.19
HDDC3-205ENST00000559898 WLSQ5T9L3 541 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 TMEM198Q66K66 360 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 DND1Q8IYX4 353 aaKnown RBP16.21■□□□□ 0.19
HDDC3-205ENST00000559898 OR2W6PQ8NHA6 318 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 UBLCP1Q8WVY7 318 aaPredicted RBP16.21■□□□□ 0.19
HDDC3-205ENST00000559898 RUBCNLQ9H714 662 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 PFDN4Q9NQP4 134 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 FETUBQ9UGM5 382 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 C15orf41Q9Y2V0 281 aa16.21■□□□□ 0.19
HDDC3-205ENST00000559898 PCNX3Q9H6A9 2034 aa16.21■□□□□ 0.18
HDDC3-205ENST00000559898 C15orf38-AP3S2A0A0A6YYH1 394 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 GNG14A0A1W2PPG7 69 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 FIGNL2A6NMB9 653 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 ENO4A6NNW6 628 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 TP53I11O14683 189 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 PLIN3O60664 434 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 PTPN6P29350 595 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 CDK9P50750 372 aaKnown RBP16.2■□□□□ 0.18
HDDC3-205ENST00000559898 NAGLUP54802 743 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 PKNOX1P55347 436 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 C6orf163Q5TEZ5 329 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 ACAD11Q709F0 780 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 YRDCQ86U90 279 aaKnown RBP16.2■□□□□ 0.18
HDDC3-205ENST00000559898 SLC22A9Q8IVM8 553 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 C4orf33Q8N1A6 199 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 TNIP2Q8NFZ5 429 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 OR7G2Q8NG99 324 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 OR4N2Q8NGD1 307 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 CDC26Q8NHZ8 85 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 LCORQ96JN0 433 aaPredicted RBP16.2■□□□□ 0.18
HDDC3-205ENST00000559898 TIMP4Q99727 224 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 KCNJ16Q9NPI9 418 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 ITGB1BP2Q9UKP3 347 aa16.2■□□□□ 0.18
HDDC3-205ENST00000559898 POLR3HQ9Y535 204 aaPredicted RBP16.2■□□□□ 0.18
HDDC3-205ENST00000559898 WDR1O75083 606 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 ICOSLGO75144 302 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 GUCY1B2O75343 617 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 HPNP05981 417 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 CT45A8P0DMV1 189 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 CT45A9P0DMV2 189 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 MYL2P10916 166 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 ZFP36L2P47974 494 aaKnown RBP16.19■□□□□ 0.18
HDDC3-205ENST00000559898 NRG3P56975 720 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 ACSM2AQ08AH3 577 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 PLCXD2Q0VAA5 305 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 CT45A2Q5DJT8 189 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 ACSM2BQ68CK6 577 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 CLEC6AQ6EIG7 209 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 ANGPTL8Q6UXH0 198 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 FRMD7Q6ZUT3 714 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 LCA5Q86VQ0 697 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 DMRTC2Q8IXT2 367 aaPredicted RBP16.19■□□□□ 0.18
HDDC3-205ENST00000559898 RELL2Q8NC24 303 aaPredicted RBP16.19■□□□□ 0.18
HDDC3-205ENST00000559898 C17orf47Q8NEP4 570 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 NRGNQ92686 78 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 TMBIM1Q969X1 311 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 C14orf79Q96F83 325 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 TMEM41AQ96HV5 264 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 FAIM2Q9BWQ8 316 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 UGT2B28Q9BY64 529 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 QPCTLQ9NXS2 382 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 DCDC2Q9UHG0 476 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 MAPRE3Q9UPY8 281 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 GPR55Q9Y2T6 319 aaPredicted RBP16.19■□□□□ 0.18
HDDC3-205ENST00000559898 ZNF780BQ9Y6R6 833 aa16.19■□□□□ 0.18
HDDC3-205ENST00000559898 GLRA3O75311 464 aa16.18■□□□□ 0.18
HDDC3-205ENST00000559898 ENO1P06733 434 aaKnown RBP16.18■□□□□ 0.18
HDDC3-205ENST00000559898 ANXA4P09525 319 aaPredicted RBP16.18■□□□□ 0.18
HDDC3-205ENST00000559898 BMP7P18075 431 aa16.18■□□□□ 0.18
HDDC3-205ENST00000559898 TACR1P25103 407 aa16.18■□□□□ 0.18
HDDC3-205ENST00000559898 MASP1P48740 699 aa16.18■□□□□ 0.18
HDDC3-205ENST00000559898 ACSF3Q4G176 576 aaPredicted RBP16.18■□□□□ 0.18
HDDC3-205ENST00000559898 POMZP3Q6PJE2 187 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms