RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RFTN2Q52LD8 501 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-230ENST00000557427 ZNF766Q5HY98 468 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 LIPJQ5W064 366 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 RNF111Q6ZNA4 994 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 ARPINQ7Z6K5 226 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 TMPRSS11BQ86T26 416 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 PDSS2Q86YH6 399 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 ZC3H7AQ8IWR0 971 aaKnown RBP11.64□□□□□ -0.55
SHMT2-230ENST00000557427 FAM9CQ8IZT9 166 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 DPP10Q8N608 796 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 RNF148Q8N7C7 305 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 GLB1L3Q8NCI6 653 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-230ENST00000557427 HIPK4Q8NE63 616 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 NUDT8Q8WV74 236 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 TEX37Q96LM6 180 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 HES7Q9BYE0 225 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 TGIF2Q9GZN2 237 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 MUC13Q9H3R2 512 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 LRTM1Q9HBL6 345 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 C1orf109Q9NX04 203 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 NAALAD2Q9Y3Q0 740 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 POLR3HQ9Y535 204 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-230ENST00000557427 IGHV3-20A0A0C4DH32 117 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PRSS51A0A1B0GVH4 220 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 TRBC2A0A5B9 178 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 FAM90A27PA6NNH2 459 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 NME4O00746 187 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 ASNA1O43681 348 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PEX1O43933 1283 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 RDH16O75452 317 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 RSL1D1O76021 490 aaKnown RBP11.63□□□□□ -0.55
SHMT2-230ENST00000557427 STAMBPO95630 424 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 HEXAP06865 529 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 G6PDP11413 515 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 ABOP16442 354 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 IL12AP29459 219 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 XCR1P46094 333 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 ERFP50548 548 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 RPL38P63173 70 aaKnown RBP11.63□□□□□ -0.55
SHMT2-230ENST00000557427 OLR1P78380 273 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 ALDH6A1Q02252 535 aaKnown RBP11.63□□□□□ -0.55
SHMT2-230ENST00000557427 RGS1Q08116 209 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 BNIP2Q12982 314 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PWP1Q13610 501 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 NFYCQ13952 458 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 IMPG1Q17R60 797 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 SLC15A3Q8IY34 581 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PQLC1Q8N2U9 271 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 OR5T3Q8NGG3 340 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 LILRB4Q8NHJ6 448 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 SUN3Q8TAQ9 357 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 SELENOMQ8WWX9 145 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 METTL21AQ8WXB1 218 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PEX11GQ96HA9 241 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 ZBTB18Q99592 522 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 ZNF184Q99676 751 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-230ENST00000557427 AIF1LQ9BQI0 150 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 KLHL31Q9H511 634 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PELI2Q9HAT8 420 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 C14orf105Q9NVL8 296 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 STMN3Q9NZ72 180 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 COQ3Q9NZJ6 369 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 LRCH1Q9Y2L9 728 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 PCDHA9Q9Y5H5 950 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 SLC22A7Q9Y694 548 aa11.63□□□□□ -0.55
SHMT2-230ENST00000557427 SCN3AQ9NY46 2000 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 IGHV1-45A0A0A0MS14 117 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 A0A1W2PQ72 361 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 TCRBV3S1A0A5B6 114 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 SEC22BO75396 215 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 CDC123O75794 336 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 LY6G6DO95868 133 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 PDYNP01213 254 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 RPSAP08865 295 aaKnown RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ZNF888P0CJ79 500 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 C1GALT1C1LP0DN25 315 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 PRPS2P11908 318 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ALOX12P18054 663 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 SLC6A2P23975 617 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 MAPK1P28482 360 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ST13P50502 369 aaKnown RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 EFNA3P52797 238 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 EEFSECP57772 596 aaKnown RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 RAB8AP61006 207 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 MRPS22P82650 360 aaKnown RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 MYBPHQ13203 477 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 E2F2Q14209 437 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 KIAA0040Q15053 153 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 CPSF6Q16630 551 aaKnown RBP eCLIP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 DEFB134Q4QY38 66 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 C6orf10Q5SRN2 563 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 SLCO4C1Q6ZQN7 724 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 KRTAP1-3Q8IUG1 177 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ANKRD53Q8N9V6 530 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 GOLM1Q8NBJ4 401 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 FAM156AQ8NDB6 213 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 TMEM125Q96AQ2 219 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 CMTM7Q96FZ5 175 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 FRMD6Q96NE9 622 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 SIGLEC12Q96PQ1 595 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms