RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 NQO2P16083 231 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 RCC1P18754 421 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 GIFP27352 417 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 HOXA13P31271 388 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 KIR3DL2P43630 455 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CAV3P56539 151 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 FKBP1AP62942 108 aaKnown RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 HTRA4P83105 476 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 HTR4Q13639 388 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ZSWIM7Q19AV6 140 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 XKR7Q5GH72 579 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ATG9BQ674R7 924 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF549Q6P9A3 640 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 UNQ6494/PRO21346Q6UXR6 183 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CALHM3Q86XJ0 350 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 SPICQ8N5J4 248 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 C15orf54Q8N8G6 183 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 NXF3Q9H4D5 531 aaKnown RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 DZANK1Q9NVP4 752 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF629Q9UEG4 869 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 LHX6Q9UPM6 363 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ANKRD12Q6UB98 2062 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 A0A087WZ62 844 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 CACNG3O60359 315 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 SC5DO75845 299 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF682O95780 498 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 F2P00734 622 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 HIST1H2ABP04908 130 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 TFPIP10646 304 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ELNP15502 786 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 XPAP23025 273 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 SREBF2Q12772 1141 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 BOP1Q14137 746 aaKnown RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 DPYSL2Q16555 572 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 H3F3CQ6NXT2 135 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 HIST3H2AQ7L7L0 130 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 PRSS58Q8IYP2 241 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 OR56B4Q8NH76 319 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 OSTF1Q92882 214 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 GCDHQ92947 438 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 HIST1H2ACQ93077 130 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 LRIG1Q96JA1 1093 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 EPYCQ99645 322 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ALG9Q9H6U8 611 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 PTPRHQ9HD43 1115 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 NPDC1Q9NQX5 325 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ENAMQ9NRM1 1142 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 RPS6KB2Q9UBS0 482 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 CLEC2DQ9UHP7 191 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 J3KR12 359 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF593O00488 134 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 DPYSL4O14531 572 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 IMPA2O14732 288 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 LILRB3O75022 631 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 CRCPO75575 148 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 FGF19O95750 216 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 MLYCDO95822 493 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 GUCA1CO95843 209 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 C6orf47O95873 294 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 OTCP00480 354 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 SEMG1P04279 462 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ABOP16442 354 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 SLC6A4P31645 630 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 BLOC1S1P78537 153 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 CACNB2Q08289 660 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 SGCGQ13326 291 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 DNLZQ5SXM8 178 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ZSCAN1Q8NBB4 408 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 OR5B17Q8NGF7 314 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 OR4Q3Q8NH05 313 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 RPLP0P6Q8NHW5 317 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 KLRG1Q96E93 195 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 TSPAN17Q96FV3 270 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ZDHHC15Q96MV8 337 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 UBL7Q96S82 380 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 MRPL45Q9BRJ2 306 aaKnown RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 TSPAN10Q9H1Z9 355 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 KCNK12Q9HB15 430 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 CLN6Q9NWW5 311 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 NFKBIL1Q9UBC1 381 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-226ENST00000556825 ADAMTS5Q9UNA0 930 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 KCNIP3Q9Y2W7 256 aa13.08□□□□□ -0.32
SHMT2-226ENST00000556825 MCIDASD6RGH6 385 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SLC28A2O43868 658 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 DPM1O60762 260 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 IGF2P01344 180 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 HLA-DOAP06340 250 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 C5AR1P21730 350 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 GZMMP51124 257 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SEMG2Q02383 582 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 BIKQ13323 160 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 TRAM1Q15629 374 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 FAM187BQ17R55 369 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 C6orf136Q5SQH8 315 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 DACT2Q5SW24 774 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ATPAF1Q5TC12 328 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 KCTD11Q693B1 232 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 MSRB3Q8IXL7 192 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 PTGR2Q8N8N7 351 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 OR5T3Q8NGG3 340 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms