RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ATP6AP2A0A1C7CYW4 349 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 ANKRD33BA6NCL7 494 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 MYO1GB0I1T2 1018 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TMEM233B4DJY2 109 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 E9PLN8 166 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TP53I11O14683 189 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 RGS14O43566 566 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TRIM3O75382 744 aaPredicted RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 SEC22BO75396 215 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 ATP6AP2O75787 350 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 ABCB1P08183 1280 aaPredicted RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 FGF4P08620 206 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TACR1P25103 407 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 ARRB2P32121 409 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TMED10P49755 219 aaKnown RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 ART3Q13508 389 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 SLC10A1Q14973 349 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 ARL13AQ5H913 290 aaPredicted RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 EMC4Q5J8M3 183 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TRILQ7L0X0 811 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TICAM1Q8IUC6 712 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 FAM9CQ8IZT9 166 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 PHF10Q8WUB8 498 aaKnown RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 ERP27Q96DN0 273 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 HSPBAP1Q96EW2 488 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 EGLN2Q96KS0 407 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 FCRL1Q96LA6 429 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 BBS4Q96RK4 519 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 SECISBP2Q96T21 854 aaKnown RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 VKORC1Q9BQB6 163 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 DOHHQ9BU89 302 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 ZNF703Q9H7S9 590 aaPredicted RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 LRTM1Q9HBL6 345 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 C1orf109Q9NX04 203 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 TAS2R7Q9NYW3 318 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 PRODH2Q9UF12 536 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 WBP11Q9Y2W2 641 aaKnown RBP13.58□□□□□ -0.24
USP28-204ENST00000537642 DNAJC15Q9Y5T4 150 aa13.58□□□□□ -0.24
USP28-204ENST00000537642 PHF3Q92576 2039 aaKnown RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 A0A1B0GVC2 190 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 PRSS44E7EML9 344 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 NPIPA2E9PIF3 369 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 NPIPA3F8WFD2 350 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 ACOX3O15254 700 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 NME6O75414 186 aaPredicted RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 PPM1BO75688 479 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 BCAS2O75934 225 aaPredicted RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 BPGMP07738 259 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 LINC00032P0C843 101 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 NAGAP17050 411 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 DRD5P21918 477 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 GRNP28799 593 aaKnown RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 MPIP34949 423 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 ETV4P43268 484 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 PPICP45877 212 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 SMSP52788 366 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 DCAF7P61962 342 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 CDSNQ15517 529 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 UGT3A2Q3SY77 523 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 TBCELQ5QJ74 424 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 DESI1Q6ICB0 168 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 XKRXQ6PP77 449 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 CLYBLQ8N0X4 340 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 OR7G2Q8NG99 324 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 OR6Y1Q8NGX8 325 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 TWIST2Q8WVJ9 160 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 NTNG2Q96CW9 530 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 OMA1Q96E52 524 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 JSRP1Q96MG2 331 aaPredicted RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 ANGPTL4Q9BY76 406 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 EML4Q9HC35 981 aaKnown RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 MIEF1Q9NQG6 463 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 SENP1Q9P0U3 644 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 GPR55Q9Y2T6 319 aaPredicted RBP13.57□□□□□ -0.24
USP28-204ENST00000537642 TRAF6Q9Y4K3 522 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 CRYBG3Q68DQ2 2970 aa13.57□□□□□ -0.24
USP28-204ENST00000537642 FRG2CA6NGY1 282 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 AQP7O14520 342 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 LSM1O15116 133 aaKnown RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 TO15178 435 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 RGS16O15492 202 aaPredicted RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 SUSD5O60279 629 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 PLOD3O60568 738 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 CHEK2O96017 543 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 JUNP05412 331 aaKnown RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 CT45A8P0DMV1 189 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 CT45A9P0DMV2 189 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 NEFHP12036 1026 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 AGAP20933 346 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 ENDOUP21128 410 aaKnown RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 CASP3P42574 277 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 NCBP2P52298 156 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP28-204ENST00000537642 PLCXD2Q0VAA5 305 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 RFTN2Q52LD8 501 aaPredicted RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 CT45A2Q5DJT8 189 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 SH2D4BQ5SQS7 431 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 FNDC7Q5VTL7 733 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 IKBIPQ70UQ0 350 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 EID3Q8N140 333 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 MARVELD2Q8N4S9 558 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms