RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 PSPHP78330 225 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 UGT3A2Q3SY77 523 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 RFTN2Q52LD8 501 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 PRAMEF20Q5VT98 475 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 TMEM198Q66K66 360 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 ARHGAP11AQ6P4F7 1023 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 TMEM64Q6YI46 380 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 R3HCC1LQ7Z5L2 792 aaKnown RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 PRR22Q8IZ63 422 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 FAM109AQ8N4B1 249 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 ANKRD42Q8N9B4 389 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 ZFP28Q8NHY6 868 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 GFM2Q969S9 779 aaKnown RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 PPCDCQ96CD2 204 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 TUBGCP3Q96CW5 907 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 EGLN2Q96KS0 407 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 FCRL1Q96LA6 429 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 TSSK3Q96PN8 268 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 SECISBP2Q96T21 854 aaKnown RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 DOHHQ9BU89 302 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 NXF5Q9H1B4 397 aaKnown RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 DEFB127Q9H1M4 99 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 REEP4Q9H6H4 257 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 TUBA8Q9NY65 449 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 NKIRAS1Q9NYS0 192 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 SH3BP4Q9P0V3 963 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 B4GALT7Q9UBV7 327 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 NUP214P35658 2090 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PINLYPA6NC86 204 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PDPK1O15530 556 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 AKAP10O43572 662 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PLOD3O60568 738 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PEX11AO75192 247 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PPM1BO75688 479 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PDE9AO76083 593 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 SNX4O95219 450 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 LRATO95237 230 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 SDC1P18827 310 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 TACR1P25103 407 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 ABCD3P28288 659 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 GPC1P35052 558 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PTGS2P35354 604 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 HPCAL1P37235 193 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 SLC1A6P48664 564 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 EMDP50402 254 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 FBXW4P57775 412 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PLCXD2Q0VAA5 305 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 MAD2L1Q13257 205 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 STX3Q13277 289 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 SLC10A1Q14973 349 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 NNATQ16517 81 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 CMPK2Q5EBM0 449 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 Q6ZPB1 254 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 NUP54Q7Z3B4 507 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PACS2Q86VP3 889 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 FNDC5Q8NAU1 212 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 OR52N2Q8NGI0 321 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 OR6Y1Q8NGX8 325 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 MTERF3Q96E29 417 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 JSRP1Q96MG2 331 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 PSMG3-AS1Q96PY0 264 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 LDAHQ9H6V9 325 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 EXO5Q9H790 373 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 SH2D2AQ9NP31 389 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 ZFP64Q9NPA5 681 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 EIF3LQ9Y262 564 aaKnown RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 DTX4Q9Y2E6 619 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 ZNF835Q9Y2P0 537 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 RAP2CQ9Y3L5 183 aa13.14□□□□□ -0.31
BRCA1-218ENST00000489037 CHCHD2Q9Y6H1 151 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 USP9YO00507 2555 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-218ENST00000489037 HECTD1Q9ULT8 2610 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 A0A087WV62 115 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 A0A0G2JMM0 328 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 A0A1B0GTH9 108 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 ATP6AP2A0A1C7CYW4 349 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 A0A1W2PPB8 328 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 A0A1W2PRS3 328 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 ANKRD33BA6NCL7 494 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 WIPF3A6NGB9 483 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 FRG2CA6NGY1 282 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 KIR3DP1A8MWS1 328 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 TBX19O60806 448 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 ERN1O75460 977 aaKnown RBP13.13□□□□□ -0.31
BRCA1-218ENST00000489037 LYPLA1O75608 230 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-218ENST00000489037 REM1O75628 298 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 ATP6AP2O75787 350 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 WISP2O76076 250 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 GLSO94925 669 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-218ENST00000489037 TPOP07202 933 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 DHRS4L1P0CG22 281 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 PRPS2P11908 318 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 BCKDHAP12694 445 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 GP1BBP13224 206 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 BGNP21810 368 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 MASP1P48740 699 aa13.13□□□□□ -0.31
BRCA1-218ENST00000489037 RPL14P50914 215 aaKnown RBP13.13□□□□□ -0.31
BRCA1-218ENST00000489037 MANFP55145 182 aaKnown RBP13.13□□□□□ -0.31
BRCA1-218ENST00000489037 MRPS22P82650 360 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms