RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SMU1	Q2TAY7	513 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	UGT3A2	Q3SY77	523 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	ZNF766	Q5HY98	468 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	NOXRED1	Q6NXP6	359 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	SPNS3	Q6ZMD2	512 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	C3P1	Q6ZMU1	363 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	RGS9BP	Q6ZS82	235 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	COMMD6	Q7Z4G1	85 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	SPATA19	Q7Z5L4	167 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	UBE3D	Q7Z6J8	389 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	ZNF595	Q8IYB9	648 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	CA13	Q8N1Q1	262 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	ZCCHC7	Q8N3Z6	543 aa	Known RBP	8.13	□□□□□ -1.11
USP4-213	ENST00000488520	CEP70	Q8NHQ1	597 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	TANK	Q92844	425 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	APIP	Q96GX9	242 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	MAGED4	Q96JG8	741 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	PTCHD1	Q96NR3	888 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	OR1F2P	Q96R84	312 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	SIKE1	Q9BRV8	207 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	HES7	Q9BYE0	225 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	TGIF2	Q9GZN2	237 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	NSRP1	Q9H0G5	558 aa	Known RBP	8.13	□□□□□ -1.11
USP4-213	ENST00000488520	RPF2	Q9H7B2	306 aa	Known RBP	8.13	□□□□□ -1.11
USP4-213	ENST00000488520	KLHL1	Q9NR64	748 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	C19orf25	Q9UFG5	118 aa	Predicted RBP	8.13	□□□□□ -1.11
USP4-213	ENST00000488520	MCM8	Q9UJA3	840 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	HAO1	Q9UJM8	370 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	DAPP1	Q9UN19	280 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	MAPRE3	Q9UPY8	281 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	USH1C	Q9Y6N9	552 aa		8.13	□□□□□ -1.11
USP4-213	ENST00000488520	NIN	Q8N4C6	2090 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	ABCA4	P78363	2273 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	IGLV3-12	A0A075B6K2	115 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	IGHV3-20	A0A0C4DH32	117 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	C1orf226	A1L170	272 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	GMNC	A6NCL1	334 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	NPIPA5	E9PKD4	350 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PROM1	O43490	865 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	SEC24D	O94855	1032 aa	Predicted RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	ETHE1	O95571	254 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	IFNA16	P05015	189 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	CAPN3	P20807	821 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PRPH2	P23942	346 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PIK3R1	P27986	724 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	TIA1	P31483	386 aa	Known RBP eCLIP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	ASMT	P46597	345 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	ALDH9A1	P49189	494 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	EFNA3	P52797	238 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	AQP5	P55064	265 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	TAS2R50	P59544	299 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	RPL38	P63173	70 aa	Known RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	GNGT1	P63211	74 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	EMX2	Q04743	252 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	TBL3	Q12788	808 aa	Known RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PCOLCE	Q15113	449 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	NSDHL	Q15738	373 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	C6orf136	Q5SQH8	315 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	C6orf163	Q5TEZ5	329 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	MEX3B	Q6ZN04	569 aa	Known RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520		Q6ZSR9	355 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PRSS41	Q7RTY9	318 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	R3HCC1L	Q7Z5L2	792 aa	Known RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PDSS2	Q86YH6	399 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	OR5T3	Q8NGG3	340 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	CHMP6	Q96FZ7	201 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	RBM18	Q96H35	190 aa	Known RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	SIGLEC12	Q96PQ1	595 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	MAPKAP1	Q9BPZ7	522 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	SORBS1	Q9BX66	1292 aa	Known RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	SYNPO2L	Q9H987	977 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	MEAF6	Q9HAF1	191 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	TNFRSF12A	Q9NP84	129 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	SLCO1B3	Q9NPD5	702 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	MIEF1	Q9NQG6	463 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	PRTFDC1	Q9NRG1	225 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	GIMAP4	Q9NUV9	329 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	ANKRD10	Q9NXR5	420 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	NPIPA1	Q9UND3	350 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	MEMO1	Q9Y316	297 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520	POLR3H	Q9Y535	204 aa	Predicted RBP	8.12	□□□□□ -1.11
USP4-213	ENST00000488520	ZNF780B	Q9Y6R6	833 aa		8.12	□□□□□ -1.11
USP4-213	ENST00000488520		A0A0G2JND7	137 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	GOLGA8Q	A0A0J9YX86	632 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	GOLGA8O	A6NCC3	632 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	GOLGA8N	F8WBI6	632 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	LSM1	O15116	133 aa	Known RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	UBD	O15205	165 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	EDF1	O60869	148 aa	Known RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	CTNS	O60931	367 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	EED	O75530	441 aa	Known RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	CDC123	O75794	336 aa	Predicted RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	TBX6	O95947	436 aa	Predicted RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	GSTP1	P09211	210 aa	Known RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	COX7A2	P14406	83 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	ALOX15	P16050	662 aa	Predicted RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	ABO	P16442	354 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	NCF2	P19878	526 aa	Predicted RBP	8.11	□□□□□ -1.11
USP4-213	ENST00000488520	AGA	P20933	346 aa		8.11	□□□□□ -1.11
USP4-213	ENST00000488520	TPP2	P29144	1249 aa	Predicted RBP	8.11	□□□□□ -1.11

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms