RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 KIR3DL1P43629 444 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 NR0B1P51843 470 aaKnown RBP13.53□□□□□ -0.24
LIMS3-205ENST00000487150 STX1BP61266 288 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 DUSP2Q05923 314 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 PLCXD2Q0VAA5 305 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 ZNF155Q12901 538 aaPredicted RBP13.53□□□□□ -0.24
LIMS3-205ENST00000487150 EXOSC7Q15024 291 aaKnown RBP13.53□□□□□ -0.24
LIMS3-205ENST00000487150 TRMT12Q53H54 448 aaKnown RBP13.53□□□□□ -0.24
LIMS3-205ENST00000487150 ANKRD26P1Q6NSI1 321 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 TMEM107Q6UX40 140 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 IL20RBQ6UXL0 311 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 RIMKLAQ8IXN7 391 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 GALNT11Q8NCW6 608 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 OR7G2Q8NG99 324 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 OR8J2Q8NGG1 315 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 KAT2AQ92830 837 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 ADIPOR1Q96A54 375 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 COQ8BQ96D53 544 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 SNRNP40Q96DI7 357 aaKnown RBP13.53□□□□□ -0.24
LIMS3-205ENST00000487150 ELP4Q96EB1 424 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 DTNBP1Q96EV8 351 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 DUSP26Q9BV47 211 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 KLHL1Q9NR64 748 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 SACM1LQ9NTJ5 587 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 OLAHQ9NV23 265 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 MRGBPQ9NV56 204 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 AIG1Q9NVV5 245 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 MRTO4Q9UKD2 239 aaKnown RBP13.53□□□□□ -0.24
LIMS3-205ENST00000487150 PCDHGB4Q9UN71 923 aa13.53□□□□□ -0.24
LIMS3-205ENST00000487150 ASPDHA6ND91 283 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 ACOT7O00154 380 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 RNASET2O00584 256 aaKnown RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 TO15178 435 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 UBDO15205 165 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 PLA2G2AP14555 144 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 EMDP50402 254 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 PSMD4P55036 377 aaKnown RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 DIO3P55073 304 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 FOXK1P85037 733 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 NTRK2Q16620 822 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF791Q3KP31 576 aaPredicted RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF385BQ569K4 471 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 FHL5Q5TD97 284 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 ZCCHC12Q6PEW1 402 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 TMEM64Q6YI46 380 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 SZRD1Q7Z422 152 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 GALNTL5Q7Z4T8 443 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 CISD2Q8N5K1 135 aaKnown RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 OR7A2PQ8NGA2 310 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 OR56A1Q8NGH5 318 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 FAR1Q8WVX9 515 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 CIDECQ96AQ7 238 aaPredicted RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 MIB2Q96AX9 1013 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 VSTM2LQ96N03 204 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 ITPAQ9BY32 194 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 WDR55Q9H6Y2 383 aaPredicted RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 Q9N2J8 555 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 SLCO1B3Q9NPD5 702 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 TCF7L2Q9NQB0 619 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 FAM120CQ9NX05 1096 aaKnown RBP13.52□□□□□ -0.25
LIMS3-205ENST00000487150 NTMQ9P121 344 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 OR10H1Q9Y4A9 318 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 NPFFR2Q9Y5X5 522 aa13.52□□□□□ -0.25
LIMS3-205ENST00000487150 GOLGA8QA0A0J9YX86 632 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 GOLGA8OA6NCC3 632 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 GOLGA8NF8WBI6 632 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 UPK1AO00322 258 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 PSMG1O95456 288 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 NADKO95544 446 aaPredicted RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 TROVE2P10155 538 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF24P17028 368 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ABCD3P28288 659 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 PRIM2P49643 509 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 MLLT10P55197 1068 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 EFR3AQ14156 821 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ELOAQ14241 798 aaKnown RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 PGS1Q32NB8 556 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 SPDYE7PQ495Y7 208 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 CYP27C1Q4G0S4 372 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 PDCD4Q53EL6 469 aaKnown RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF468Q5VIY5 522 aaPredicted RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 SLC22A10Q63ZE4 541 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 EPGNQ6UW88 154 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 FAM47EQ6ZV65 393 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF551Q7Z340 670 aaPredicted RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 SLC34A3Q8N130 599 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 FBXW8Q8N3Y1 598 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 KRTCAP2Q8N6L1 136 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 CDRT4Q8N9R6 151 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 FAM13CQ8NE31 585 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 PSMA8Q8TAA3 256 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 SFXN5Q8TD22 340 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 GRHL3Q8TE85 626 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 DOK4Q8TEW6 326 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 PAQR8Q8TEZ7 354 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 NR4A3Q92570 626 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 FRMD6Q96NE9 622 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 BARD1Q99728 777 aaKnown RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 FAM173AQ9BQD7 235 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 CCDC28BQ9BUN5 200 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms