RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PDE7AQ13946 482 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 EIF2S3LQ2VIR3 472 aaKnown RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 ZNF791Q3KP31 576 aaPredicted RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 ZNF324BQ6AW86 544 aaPredicted RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 R3HCC1LQ7Z5L2 792 aaKnown RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 KRTCAP2Q8N6L1 136 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 GOLM1Q8NBJ4 401 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 ST6GALNAC3Q8NDV1 305 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 OR7A2PQ8NGA2 310 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 NUDT8Q8WV74 236 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 ZNF75CPQ92670 426 aaPredicted RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 TP53INP1Q96A56 240 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 ACBD3Q9H3P7 528 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 MEAF6Q9HAF1 191 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 SACM1LQ9NTJ5 587 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 DDX18Q9NVP1 670 aaKnown RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 NOP53Q9NZM5 478 aaKnown RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 ZGRF1Q86YA3 2104 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 GOLGA8QA0A0J9YX86 632 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 GOLGA8OA6NCC3 632 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 GOLGA8NF8WBI6 632 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 PLOD3O60568 738 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 TBX19O60806 448 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 ZNF24P17028 368 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 RPL3P39023 403 aaKnown RBP13.6□□□□□ -0.23
USP4-212ENST00000486549 DNASE1L1P49184 302 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 TDGF1P3P51864 188 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 DIO3P55073 304 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 FBXW4P57775 412 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 PLGLB1Q02325 96 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 PRAMEF20Q5VT98 475 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 GFRALQ6UXV0 394 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 FAM47EQ6ZV65 393 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 SZRD1Q7Z422 152 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 WDR75Q8IWA0 830 aaKnown RBP13.6□□□□□ -0.23
USP4-212ENST00000486549 C17orf47Q8NEP4 570 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 OR10G3Q8NGC4 313 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 ZFP28Q8NHY6 868 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 PRR7Q8TB68 274 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 LRRC8CQ8TDW0 803 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 SSC4DQ8WTU2 575 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 ERP27Q96DN0 273 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 MTERF3Q96E29 417 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 ZNF764Q96H86 408 aaPredicted RBP13.6□□□□□ -0.23
USP4-212ENST00000486549 LCORQ96JN0 433 aaPredicted RBP13.6□□□□□ -0.23
USP4-212ENST00000486549 SGCZQ96LD1 299 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 FOLH1BQ9HBA9 442 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 ZNF446Q9NWS9 450 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 ATP6V1HQ9UI12 483 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 NPFFR2Q9Y5X5 522 aa13.6□□□□□ -0.23
USP4-212ENST00000486549 PINLYPA6NC86 204 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 TRPC5OSA6NMA1 111 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 CAPN14A8MX76 684 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 NPIPA5E9PKD4 350 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 SDHDO14521 159 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 KLF11O14901 512 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 TFECO14948 347 aaPredicted RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 HDAC3O15379 428 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 COQ9O75208 318 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 WISP2O76076 250 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 SLITRK5O94991 958 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 UNC5CO95185 931 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 LAMP1P11279 417 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 DDX5P17844 614 aaKnown RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 LBPP18428 481 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 ABCD3P28288 659 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 PIGAP37287 484 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 TMED10P49755 219 aaKnown RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 CDK9P50750 372 aaKnown RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 MANFP55145 182 aaKnown RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 CORO7P57737 925 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 KCNK10P57789 538 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 DCAF7P61962 342 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 PLCXD2Q0VAA5 305 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 RPS6KA2Q15349 733 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 SMU1Q2TAY7 513 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 RNFT1Q5M7Z0 435 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 CPTPQ5TA50 214 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 SLC22A10Q63ZE4 541 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 DND1Q8IYX4 353 aaKnown RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 OR2M7Q8NG81 312 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 ZBED6CLQ96FA7 236 aaPredicted RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 PSMG3-AS1Q96PY0 264 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 WDR55Q9H6Y2 383 aaPredicted RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 INTS9Q9NV88 658 aaKnown RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 ASIC5Q9NY37 505 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 TAS2R9Q9NYW1 312 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 SEC14L3Q9UDX4 400 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 NPIPA1Q9UND3 350 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 C19orf53Q9UNZ5 99 aaPredicted RBP13.59□□□□□ -0.23
USP4-212ENST00000486549 LRRK2Q5S007 2527 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 RELNP78509 3460 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 HECTD1Q9ULT8 2610 aa13.59□□□□□ -0.23
USP4-212ENST00000486549 A0A087WV62 115 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 FRG2CA6NGY1 282 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 FAM166BA8MTA8 275 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 UPK1AO00322 258 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 PLOD2O00469 737 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 TP53I11O14683 189 aa13.58□□□□□ -0.24
USP4-212ENST00000486549 ERN1O75460 977 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms