RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PATE1Q8WXA2 126 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 S100ZQ8WXG8 99 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 HS6ST2Q96MM7 605 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 C19orf43Q9BQ61 176 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 RNF121Q9H920 327 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 CLEC4AQ9UMR7 237 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 PPM1BO75688 479 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 RASAL1O95294 804 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 CD2P06729 351 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 TACSTD2P09758 323 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 PAX7P23759 505 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 SLC19A1P41440 591 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 OR1D5P58170 312 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 HSD11B2P80365 405 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 MAT1AQ00266 395 aaKnown RBP7□□□□□ -1.29
SYNE1-213ENST00000448038 CRYZQ08257 329 aaKnown RBP7□□□□□ -1.29
SYNE1-213ENST00000448038 EXOSC7Q15024 291 aaKnown RBP7□□□□□ -1.29
SYNE1-213ENST00000448038 C11orf88Q6PI97 169 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 FAM83HQ6ZRV2 1179 aaPredicted RBP7□□□□□ -1.29
SYNE1-213ENST00000448038 SERPINA11Q86U17 422 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 TOR1AIP2Q8NFQ8 470 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 OR52R1Q8NGF1 315 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 CCL4L1Q8NHW4 92 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF559Q9BR84 538 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 ENPP4Q9Y6X5 453 aa7□□□□□ -1.29
SYNE1-213ENST00000448038 PTPRZ1P23471 2315 aaPredicted RBP7□□□□□ -1.29
SYNE1-213ENST00000448038 SCRG1O75711 98 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 P04436 131 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ATP12AP54707 1039 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 MLLT10P55197 1068 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 MAPK14Q16539 360 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SLC27A4Q6P1M0 643 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 TSSK4Q6SA08 328 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 WDR53Q7Z5U6 358 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 NLRP8Q86W28 1048 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 FAM217AQ8IXS0 508 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 PRR22Q8IZ63 422 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 FRMD1Q8N878 549 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 OR51Q1Q8NH59 317 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 PNPLA2Q96AD5 504 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 CDX2Q99626 313 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 FGF21Q9NSA1 209 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 B4GALT7Q9UBV7 327 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SLC23A2Q9UGH3 650 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 PPP3R1P63098 170 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SELENOWP63302 87 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SLC36A3Q495N2 470 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ALG10BQ5I7T1 473 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 RAET1LQ5VY80 246 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SPNS2Q8IVW8 549 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 RBP7Q96R05 134 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SOX17Q9H6I2 414 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 HHATLQ9HCP6 504 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 BRD7Q9NPI1 651 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 B3GAT2Q9NPZ5 323 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ACSS1Q9NUB1 689 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 TEX10Q9NXF1 929 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 BTBD3Q9Y2F9 522 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 OR5K3A6NET4 321 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 UNC119BA6NIH7 251 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 A8MVJ9 347 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 BCL6P41182 706 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 TNFRSF17Q02223 184 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 CEP78Q5JTW2 689 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 MZT2BQ6NZ67 158 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 MAVSQ7Z434 540 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF619Q8N2I2 560 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 NEK7Q8TDX7 302 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 CDS1Q92903 461 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 MUS81Q96NY9 551 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ERMAPQ96PL5 475 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 OR6C1Q96RD1 312 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 HPF1Q9NWY4 346 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SLAMF8Q9P0V8 285 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 M0R3H8 397 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 CD36P16671 472 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 RAB38P57729 211 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ABHD17BQ5VST6 288 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF676Q8N7Q3 588 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 OR2T33Q8NG76 320 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 THEM6Q8WUY1 208 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 WNT16Q9UBV4 365 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 BLACEA4D250 179 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 OXSR1O95747 527 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 CEACAM5P06731 702 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 C8BP07358 591 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 DLX2Q07687 328 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SLC5A12Q1EHB4 618 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 PERM1Q5SV97 790 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 RAB43Q86YS6 212 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF595Q8IYB9 648 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 UBE2J2Q8N2K1 259 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 METTL25Q8N6Q8 603 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SFXN5Q8TD22 340 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 SGTBQ96EQ0 304 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 CRELD1Q96HD1 420 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 FEVQ99581 238 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 TEX101Q9BY14 249 aa6.99□□□□□ -1.29
SYNE1-213ENST00000448038 ULBP3Q9BZM4 244 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms