RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CAMK1Q14012 370 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 STPG1Q5TH74 334 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 HMBOX1Q6NT76 420 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 PTCHD4Q6ZW05 846 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF765Q7L2R6 523 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 EPHX4Q8IUS5 362 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 OR14L1PQ8NHC6 308 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 MRPL48Q96GC5 212 aaKnown RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 MAELQ96JY0 434 aaKnown RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ATOH8Q96SQ7 321 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 S100A13Q99584 98 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 DOHHQ9BU89 302 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ATP13A2Q9NQ11 1180 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 C14orf119Q9NWQ9 140 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 PLD2O14939 933 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 GABRA3P34903 492 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 NR0B1P51843 470 aaKnown RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 Q6ZNB5 142 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 PELI3Q8N2H9 469 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 OR6N1Q8NGY5 312 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 GRHL3Q8TE85 626 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 PYURFQ96I23 114 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 CCDC86Q9H6F5 360 aaKnown RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 CLN6Q9NWW5 311 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ING3Q9NXR8 418 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 PTGFRNQ9P2B2 879 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF222Q9UK12 451 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 GPR45Q9Y5Y3 372 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 SESN1Q9Y6P5 492 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 FAM240BA0A1B0GVZ2 78 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ARHGEF33A8MVX0 844 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 DLSTP36957 453 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 CRISP3P54108 245 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 SMIM11AP58511 58 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 KCNAB1Q14722 419 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ZSWIM7Q19AV6 140 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 FAM180BQ6P0A1 224 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF517Q6ZMY9 492 aaPredicted RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 GPAT4Q86UL3 456 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 CCDC28AQ8IWP9 274 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 SLC34A3Q8N130 599 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 LILRA3Q8N6C8 439 aaPredicted RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 CADM4Q8NFZ8 388 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 FRS2Q8WU20 508 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 TUBA1CQ9BQE3 449 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 SPRTNQ9H040 489 aaPredicted RBP10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ACTL8Q9H568 366 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 RNF121Q9H920 327 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 ARNT2Q9HBZ2 717 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 FAM118AQ9NWS6 357 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 LUZP4Q9P127 313 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 RABL2BQ9UNT1 228 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 PRSS21Q9Y6M0 314 aa10.09□□□□□ -0.79
TCOF1-204ENST00000427724 IGLV3-10A0A075B6K4 115 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 ZNF701M0R085 212 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-204ENST00000427724 KHKP50053 298 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 TUBA1BP68363 451 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.08□□□□□ -0.8
TCOF1-204ENST00000427724 CD300CQ08708 224 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 TBRG1Q3YBR2 411 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 PLK5Q496M5 336 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 CDC73Q6P1J9 531 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 TMEM207Q6UWW9 146 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 TUBA1AQ71U36 451 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 ALDH16A1Q8IZ83 802 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 EFHD2Q96C19 240 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-204ENST00000427724 RADILQ96JH8 1075 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 PHOX2BQ99453 314 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 IER2Q9BTL4 223 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 C1QTNF2Q9BXJ5 285 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 NECTIN3Q9NQS3 549 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 INIPQ9NRY2 104 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 VAPAQ9P0L0 249 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 PEX16Q9Y5Y5 336 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 I3L521 148 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 UGT2B17O75795 530 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 KLHL18O94889 574 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 NPPAP01160 153 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 SLC19A1P41440 591 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 GDI2P50395 445 aaKnown RBP10.08□□□□□ -0.8
TCOF1-204ENST00000427724 UGT2B15P54855 530 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 SLC36A3Q495N2 470 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 HSDL2Q6YN16 418 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 TMPRSS11AQ6ZMR5 421 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 RANBP3LQ86VV4 465 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-204ENST00000427724 SLC22A15Q8IZD6 547 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 CADM3Q8N126 398 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 GHDCQ8N2G8 530 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 C12orf4Q9NQ89 552 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 UCKL1Q9NWZ5 548 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 ERVK-18Q9QC07 812 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 LOC285095A0A1B0GVY8 99 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 TLCD2A6NGC4 264 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 H0YGG7 62 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 MITFO75030 526 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-204ENST00000427724 CSF2P04141 144 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 YES1P07947 543 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 GP1BBP13224 206 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 CD46P15529 392 aa10.08□□□□□ -0.8
TCOF1-204ENST00000427724 CCNOP22674 350 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms