RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 GRIN2CQ14957 1233 aa13.55□□□□□ -0.24
PCDHA11-201ENST00000398640 SFT2D3Q587I9 215 aa13.55□□□□□ -0.24
PCDHA11-201ENST00000398640 C6orf136Q5SQH8 315 aa13.55□□□□□ -0.24
PCDHA11-201ENST00000398640 VTCN1Q7Z7D3 282 aa13.55□□□□□ -0.24
PCDHA11-201ENST00000398640 CNIH3Q8TBE1 160 aa13.55□□□□□ -0.24
PCDHA11-201ENST00000398640 CLEC4EQ9ULY5 219 aa13.55□□□□□ -0.24
PCDHA11-201ENST00000398640 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 C2CD4DB7Z1M9 353 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 COL13A1Q5TAT6 717 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 NANOGP8Q6NSW7 305 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 XKRXQ6PP77 449 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 CNEP1R1Q8N9A8 125 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 OR56A3Q8NH54 315 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 SLC25A44Q96H78 314 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 NANOGQ9H9S0 305 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 LAMB2P55268 1798 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 YY2O15391 372 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 FNTBP49356 437 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 AFF3P51826 1226 aaKnown RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 TAS2R43P59537 309 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 PSMA6P60900 246 aaKnown RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 SLC10A2Q12908 348 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 PLGLAQ15195 96 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 CES4AQ5XG92 561 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 ZNF382Q96SR6 550 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 CCDC86Q9H6F5 360 aaKnown RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 FLRT2O43155 660 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 DFNA5O60443 496 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 BRINP1O60477 761 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 PORP16435 677 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 F8A1P23610 371 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 CTHP32929 405 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 MANEAQ5SRI9 462 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 GAREM2Q75VX8 874 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 DPPA4Q7L190 304 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 IL17RCQ8NAC3 791 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 TMEM68Q96MH6 324 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 MROQ9BYG7 248 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 POPDC3Q9HBV1 291 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 MARCH4Q9P2E8 410 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 STOX2Q9P2F5 926 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 C1orf226A1L170 272 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 OTOL1A6NHN0 477 aaPredicted RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 HRGP04196 525 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 CD79AP11912 226 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 GPR4P46093 362 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 TIFABQ6ZNK6 161 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 SLC22A16Q86VW1 577 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 ZSWIM9Q86XI8 627 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 TOR1AIP2Q8NFQ8 470 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 LRRC20Q8TCA0 184 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 PITX2Q99697 317 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 YTHDF1Q9BYJ9 559 aaKnown RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 CA5BQ9Y2D0 317 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 EXOSC1Q9Y3B2 195 aaKnown RBP13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 ADAM18Q9Y3Q7 739 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 GMEB1Q9Y692 573 aa13.54□□□□□ -0.24
PCDHA11-201ENST00000398640 EFCAB7A8K855 629 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ABCB7O75027 752 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 DNAJB13P59910 316 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 GLT8D1Q68CQ7 371 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 NXPE4Q6UWF7 544 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 LARP4Q71RC2 724 aaKnown RBP eCLIP13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ERMP1Q7Z2K6 904 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 RBM12BQ8IXT5 1001 aaKnown RBP13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 OR5J2Q8NH18 312 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ELP5Q8TE02 316 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 POLE4Q9NR33 117 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 M0R129 80 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 S100A2P29034 98 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 POU3F4P49335 361 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ZXDBP98169 803 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 TUBB3Q13509 450 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 IRF4Q15306 451 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 LIPKQ5VXJ0 399 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ZER1Q7Z7L7 766 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ZNF709Q8N972 641 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 OR2T33Q8NG76 320 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 PROKR1Q8TCW9 393 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 CREB3L4Q8TEY5 395 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 DDIT4LQ96D03 193 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ASB16Q96NS5 453 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 MYADMQ96S97 322 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 WNK3Q9BYP7 1800 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 OR52A4PA6NMU1 304 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ARSFP54793 590 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 DOC2AQ14183 400 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 TMEM31Q5JXX7 168 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 HMBOX1Q6NT76 420 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 TIGD4Q8IY51 512 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 C15orf40Q8WUR7 153 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 GATAD2BQ8WXI9 593 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 NR4A3Q92570 626 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 GAREM1Q9H706 876 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 CDH20Q9HBT6 801 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 RDH8Q9NYR8 311 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 DDX60LQ5H9U9 1706 aaKnown RBP13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 CNOT4O95628 575 aaKnown RBP13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 ACVR1BP36896 505 aa13.53□□□□□ -0.24
PCDHA11-201ENST00000398640 FAM76BQ5HYJ3 339 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms