RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 TGM7Q96PF1 710 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ZNF300Q96RE9 604 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 NEURL2Q9BR09 285 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 RUBCNLQ9H714 662 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 EPHA6Q9UF33 1036 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 TMPRSS11DO60235 418 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 MAN1A2O60476 641 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 SERPINB7O75635 380 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 DIRAS1O95057 198 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 FADS2O95864 444 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF888P0CJ79 500 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 VBP1P61758 197 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 BTN3A2P78410 334 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 GPLD1P80108 840 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 INAQ16352 499 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 VTCN1Q7Z7D3 282 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 PLXDC1Q8IUK5 500 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 OR4C6Q8NH72 309 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 DYNC2LI1Q8TCX1 351 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 TAMM41Q96BW9 452 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 TPD52L3Q96J77 140 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 LYARQ9NX58 379 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ERVK-11Q9UQG0 969 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 IGHV1OR21-1A0A087WYE8 117 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 SIGLEC6O43699 453 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ABCB1P08183 1280 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 VSX2P58304 361 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 LSM3P62310 102 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 TUBA1BP68363 451 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 DGCR6Q14129 220 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 DEFB110Q30KQ9 67 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF385BQ569K4 471 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 TUBA1AQ71U36 451 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 GPR155Q7Z3F1 870 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 CSNK1A1LQ8N752 337 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 NDNFQ8TB73 568 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ZCCHC10Q8TBK6 192 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 UTP15Q8TED0 518 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ZFP90Q8TF47 636 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 UCN3Q969E3 161 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 LGALS12Q96DT0 336 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 HRASLS5Q96KN8 279 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ARRDC1-AS1Q9H2J1 176 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 SOHLH2Q9NX45 425 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 VPS4AQ9UN37 437 aa12.39□□□□□ -0.43
SQSTM1-201ENST00000360718 ARHGAP33O14559 1287 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 TBX19O60806 448 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 C1QCP02747 245 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 CERS1P27544 350 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 CSF2RBP32927 897 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 MLLT3P42568 568 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 MASP1P48740 699 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 NR0B2Q15466 257 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 NDUFAF5Q5TEU4 345 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 UBE2UQ5VVX9 321 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 CLECL1Q8IZS7 167 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 SHISA5Q8N114 240 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 CARFQ8N187 725 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 Q8N9G6 341 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 OR4A15Q8NGL6 344 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 MYDGFQ969H8 173 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 SERINC2Q96SA4 455 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 DOHHQ9BU89 302 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 ITPAQ9BY32 194 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 RASSF1Q9NS23 344 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 TEX10Q9NXF1 929 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF282Q9UDV7 671 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 GMEB2Q9UKD1 530 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 PADI2Q9Y2J8 665 aa12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 MRPS2Q9Y399 296 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-201ENST00000360718 IGHV5-51A0A0C4DH38 117 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 ADAMDEC1O15204 470 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 B3GALT2O43825 422 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 SRPX2O60687 465 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 CD36P16671 472 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 MPLP40238 635 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 AMZ1Q400G9 498 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 MCATQ8IVS2 390 aaKnown RBP12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 C11orf65Q8NCR3 313 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 SLC38A4Q969I6 547 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 ZHX1-C8orf76Q96EF9 292 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF764Q96H86 408 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 C7orf34Q96L11 122 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 DPH2Q9BQC3 489 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 GABARAPL3Q9BY60 117 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 PDE7BQ9NP56 450 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 STARD5Q9NSY2 213 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 PLCXD1Q9NUJ7 323 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 EHD3Q9NZN3 535 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 KLHL3Q9UH77 587 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 PHF11Q9UIL8 331 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 FBXW2Q9UKT8 454 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 RAB23Q9ULC3 237 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 A0A1W2PRB8 838 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 C1orf226A1L170 272 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 TMEM247A6NEH6 219 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 EFCAB9A8MZ26 197 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 PDPK1O15530 556 aa12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 GALR2O43603 387 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-201ENST00000360718 PNLIPP16233 465 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms