RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MC3RP41968 323 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 PRR5P85299 388 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 COX10Q12887 443 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 NCF4Q15080 339 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 MFSD9Q8NBP5 474 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 MORN4Q8NDC4 146 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SRFBP1Q8NEF9 429 aaKnown RBP20.49■□□□□ 0.87
SHMT1-202ENST00000352886 OR4E2Q8NGC2 313 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 GPA33Q99795 319 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 HHATLQ9HCP6 504 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 CASC3O15234 703 aaKnown RBP20.49■□□□□ 0.87
SHMT1-202ENST00000352886 GPX5O75715 221 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 MPIP34949 423 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SOX6P35712 828 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SPHARQ15513 63 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF425Q6IV72 752 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 CD300LDQ6UXZ3 194 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 OR9A2Q8NGT5 310 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 MOAP1Q96BY2 351 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 TRNT1Q96Q11 434 aaKnown RBP20.49■□□□□ 0.87
SHMT1-202ENST00000352886 OR7D2Q96RA2 312 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 QPCTLQ9NXS2 382 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 DNAH14Q0VDD8 3507 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SZT2Q5T011 3432 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SAGE2PA6NJ88 616 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PROM1O43490 865 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PBX2P40425 430 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 ARFIP1P53367 373 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 SLC13A2Q13183 592 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 GINS1Q14691 196 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 OCLNQ16625 522 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 NDUFA9Q16795 377 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 TJAP1Q5JTD0 557 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 C1orf94Q6P1W5 598 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 CADM3Q8N126 398 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PARP16Q8N5Y8 322 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 FCRL4Q96PJ5 515 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PINK1Q9BXM7 581 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 KIR3DX1Q9H7L2 352 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF229Q9UJW7 825 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 CFL2Q9Y281 166 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 COLEC10Q9Y6Z7 277 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PRSS38A1L453 326 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 EMC8O43402 210 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 ADAM23O75077 832 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PCYT1AP49585 367 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF45Q02386 682 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PRKCDQ05655 676 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 CD300CQ08708 224 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF181Q2M3W8 571 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 TMEM196Q5HYL7 178 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 AMIGO1Q86WK6 493 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 LINC00471Q8N535 108 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 NUP43Q8NFH3 380 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PRR14Q9BWN1 585 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 MND1Q9BWT6 205 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 POLDIP3Q9BY77 421 aaKnown RBP20.48■□□□□ 0.87
SHMT1-202ENST00000352886 EXOSC4Q9NPD3 245 aaKnown RBP20.48■□□□□ 0.87
SHMT1-202ENST00000352886 GIMAP4Q9NUV9 329 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D29Q9UFV1 150 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 PEX16Q9Y5Y5 336 aa20.48■□□□□ 0.87
SHMT1-202ENST00000352886 ISPDA4D126 451 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 LINC01565O15544 149 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 EML2O95834 649 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 TSFMP43897 325 aaKnown RBP20.47■□□□□ 0.87
SHMT1-202ENST00000352886 GIPRP48546 466 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 STXBP1P61764 594 aaKnown RBP20.47■□□□□ 0.87
SHMT1-202ENST00000352886 PPP2CBP62714 309 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 PPP2CAP67775 309 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 BTN3A2P78410 334 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 AGAP7PQ5VUJ5 663 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 STEAP3Q658P3 488 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 SYCE2Q6PIF2 218 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 MEX3DQ86XN8 651 aaKnown RBP20.47■□□□□ 0.87
SHMT1-202ENST00000352886 KCT2Q8NC54 265 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 LCN9Q8WX39 176 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 ELSPBP1Q96BH3 223 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 ELP4Q96EB1 424 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 SNX7Q9UNH6 387 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 HEBP2Q9Y5Z4 205 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 KDM1AO60341 852 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 CHRM5P08912 532 aaPredicted RBP20.47■□□□□ 0.87
SHMT1-202ENST00000352886 SEPHS1P49903 392 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF311Q5JNZ3 666 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 ACSM5Q6NUN0 579 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 DGLUCYQ7Z3D6 616 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 FAM26EQ8N5C1 309 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 ZG16BQ96DA0 208 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 OR2M4Q96R27 311 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 SLC38A1Q9H2H9 487 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 C3orf14Q9HBI5 128 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF780BQ9Y6R6 833 aa20.47■□□□□ 0.87
SHMT1-202ENST00000352886 POM121BA6NF01 834 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 BTN3A3O00478 584 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 FRS3O43559 492 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 TNFRSF4P43489 277 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 TAS2R41P59536 307 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 CHRNEQ04844 493 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 KHDRBS1Q07666 443 aaKnown RBP eCLIP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 LTB4RQ15722 352 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms