RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 G3V3Q6 166 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 EIF4E2O60573 245 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 LY86O95711 162 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CH25HO95992 272 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 RHOCP08134 193 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HNRNPA1P09651 372 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM163BP0C2L3 166 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HGFP14210 728 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF7P17097 686 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PPIBP23284 216 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC5A2P31639 672 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 MTNR1BP49286 362 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 UBE2MP61081 183 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ERVK-21P61565 698 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PLCXD2Q0VAA5 305 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OR5I1Q13606 314 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HNRNPA1L2Q32P51 320 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF404Q494X3 552 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 IQCCQ4KMZ1 466 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ABLIM2Q6H8Q1 611 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 GLYATQ6IB77 296 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF572Q7Z3I7 529 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 VWA5B2Q8N398 1253 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OR9I1Q8NGQ6 314 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OR51Q1Q8NH59 317 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PIWIL2Q8TC59 973 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 METTL21AQ8WXB1 218 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SPATC1LQ9H0A9 340 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CHST11Q9NPF2 352 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 BABAM2Q9NXR7 383 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 TAS2R8Q9NYW2 309 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ADAMTS6Q9UKP5 1117 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A087WUU8 490 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 M0R1X1 148 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 LEFTY2O00292 366 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ARHGAP33O14559 1287 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SORBS2O94875 1100 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CA1P00915 261 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 DRD5P21918 477 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC7A1P30825 629 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 L1CAMP32004 1257 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 IRS1P35568 1242 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 KLK7P49862 253 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 GALCP54803 685 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RAP2BP61225 183 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 LCN6P62502 163 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 LIPNQ5VXI9 398 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RNASEKQ6P5S7 137 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 BPHLQ86WA6 291 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 UNC93AQ86WB7 457 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 NPAS4Q8IUM7 802 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ETFBKMTQ8IXQ9 262 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 EIF4E3Q8N5X7 224 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 DCAF4Q8WV16 495 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SORCS1Q8WY21 1168 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF486Q96H40 463 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 GABRG3Q99928 467 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SEMA4AQ9H3S1 761 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 B3GAT2Q9NPZ5 323 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 MYOTQ9UBF9 498 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PDS5BQ9NTI5 1447 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PNMA6FA0A0J9YX94 578 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 TPP1O14773 563 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SLITRK5O94991 958 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 OR2C1O95371 312 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 NPTXRO95502 500 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SMIM6P0DI80 62 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SMIM17P0DL12 118 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CD72P21854 359 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 OMGP23515 440 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ITGB8P26012 769 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PRDX3P30048 256 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 G6PCP35575 357 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 AGTR2P50052 363 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ASCL1P50553 236 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 FCGRTP55899 365 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF415Q09FC8 603 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PGM5Q15124 567 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RPEL1Q2QD12 228 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM180BQ6P0A1 224 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC26A9Q7LBE3 791 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 GPR142Q7Z601 462 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 RANBP3LQ86VV4 465 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 OR1N2Q8NGR9 330 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 UBALD1Q8TB05 177 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 PIGQQ9BRB3 760 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 NKX6-2Q9C056 277 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 LPAR5Q9H1C0 372 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 SOX17Q9H6I2 414 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ABCC13Q9NSE7 274 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1W2PNV4 684 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 ZFP92A6NM28 416 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 GPR171O14626 319 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 BCAS2O75934 225 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 AMY2AP04746 511 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A6P0DMU7 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A5P0DMU8 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A7P0DMV0 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A8P0DMV1 189 aa7.3□□□□□ -1.24
LIMCH1-201ENST00000313860 CT45A9P0DMV2 189 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms