RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FCRL4Q96PJ5 515 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 SLC6A16Q9GZN6 736 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 ISG20L2Q9H9L3 353 aaKnown RBP13.58□□□□□ -0.24
SDC1-201ENST00000254351 NANSQ9NR45 359 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 THSD1Q9NS62 852 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 CLEC4EQ9ULY5 219 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 PCDHGB7Q9Y5F8 929 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 A0A1W2PPL8 197 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 MTMR11A4FU01 709 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 LINC00862A6NCI5 91 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ARHGEF33A8MVX0 844 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ANHXE9PGG2 379 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ADAM12O43184 909 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 STC2O76061 302 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 PIPP12273 146 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 HSD3B1P14060 373 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 TIA1P31483 386 aaKnown RBP eCLIP13.57□□□□□ -0.242e-6■■■■□ 26.7
SDC1-201ENST00000254351 MTNR1AP48039 350 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 LIMS1P48059 325 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 CLCNKAP51800 687 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 AKR1D1P51857 326 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 KIAA1024LP59773 190 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 OC90Q02509 493 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 ILKQ13418 452 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 CRTC1Q6UUV9 634 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ALKAL2Q6UX46 152 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ZNF782Q6ZMW2 699 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 UXS1Q8NBZ7 420 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 OR4K5Q8NGD3 323 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 HSD17B8Q92506 261 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 CXorf58Q96LI9 332 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 GPR137Q96N19 417 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 HHIPQ96QV1 700 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ABHD1Q96SE0 405 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 REEP4Q9H6H4 257 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 CXorf36Q9H7Y0 433 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 BTNL2Q9UIR0 455 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 STOML2Q9UJZ1 356 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 FBXW2Q9UKT8 454 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SLC28A2O43868 658 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SLC2A10O95528 541 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SOD1P00441 154 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ADAP00813 363 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 PPIBP23284 216 aaKnown RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 BUD31P41223 144 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 SNRPGP62308 76 aaKnown RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 SYPL1Q16563 259 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 BICRALQ6AI39 1079 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 RTL4Q6ZR62 310 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 C17orf107Q6ZR85 190 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 QSOX2Q6ZRP7 698 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SPRYD4Q8WW59 207 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 MARC2Q969Z3 335 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ARSGQ96EG1 525 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 WDR89Q96FK6 387 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 TOE1Q96GM8 510 aaKnown RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 SECISBP2Q96T21 854 aaKnown RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 SERHL2Q9H4I8 314 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 DIMT1Q9UNQ2 313 aaKnown RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 CSNK1G3Q9Y6M4 447 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 M0R233 179 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 IFNA7P01567 189 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 TPOP07202 933 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 LIMS3P0CW19 117 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 LIMS4P0CW20 117 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 KELP23276 732 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 PTX3P26022 381 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 SHC1P29353 583 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 DGKGP49619 791 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 CNTN1Q12860 1018 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 FGL2Q14314 439 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SMARCD3Q6STE5 483 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ZNF687Q8N1G0 1237 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 OXR1Q8N573 874 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 CREB3L1Q96BA8 519 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 FNDC11Q9BVV2 318 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SAV1Q9H4B6 383 aaPredicted RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 SRRDQ9UH36 339 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 ENOPH1Q9UHY7 261 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 RASD1Q9Y272 281 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 TMEM5Q9Y2B1 443 aa13.57□□□□□ -0.24
SDC1-201ENST00000254351 SF3B6Q9Y3B4 125 aaKnown RBP13.57□□□□□ -0.24
SDC1-201ENST00000254351 RPS10-NUDT3A0A1W2PQS6 291 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 QSOX1O00391 747 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 FZD6O60353 706 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 ACSM4P0C7M7 580 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 NAT2P11245 290 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 PDHA2P29803 388 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SLC6A1P30531 599 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SLC6A11P48066 632 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SELENOPP49908 381 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 TSPAN5P62079 268 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SYTL3Q4VX76 610 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SFRP5Q5T4F7 317 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 REEP3Q6NUK4 255 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 MSANTD1Q6ZTZ1 278 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 TAS1R1Q7RTX1 841 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 SRFBP1Q8NEF9 429 aaKnown RBP13.56□□□□□ -0.24
SDC1-201ENST00000254351 GIMAP1Q8WWP7 306 aa13.56□□□□□ -0.24
SDC1-201ENST00000254351 EXOSC8Q96B26 276 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms