RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ZBED6CLQ96FA7 236 aaPredicted RBP11.31□□□□□ -0.6
USHBP1-201ENST00000252597 MSANTD3Q96H12 275 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 SLC6A18Q96N87 628 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 QRFPRQ96P65 431 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 SLC46A2Q9BY10 475 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 A0A1W2PS29 197 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 SSNA1O43805 119 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 MRPS14O60783 128 aaKnown RBP11.31□□□□□ -0.6
USHBP1-201ENST00000252597 LALBAP00709 142 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 C8AP07357 584 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 CD3GP09693 182 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 PTX3P26022 381 aaPredicted RBP11.31□□□□□ -0.6
USHBP1-201ENST00000252597 OPRD1P41143 372 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 WNT4P56705 351 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 ARHGEF6Q15052 776 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 PIP5KL1Q5T9C9 394 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 TMEM107Q6UX40 140 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 MSANTD1Q6ZTZ1 278 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 ESPNLQ6ZVH7 1005 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 NANOGP1Q8N7R0 232 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 TMEM145Q8NBT3 493 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 GANCQ8TET4 914 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 SLC38A2Q96QD8 506 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 TDP1Q9NUW8 608 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 NUDT15Q9NV35 164 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 AHSPQ9NZD4 102 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 CNOT2Q9NZN8 540 aaKnown RBP11.31□□□□□ -0.6
USHBP1-201ENST00000252597 MGAT4BQ9UQ53 548 aa11.31□□□□□ -0.6
USHBP1-201ENST00000252597 ANTXRLA6NF34 631 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 CENPBD1B2RD01 187 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 TSPAN4O14817 238 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 FABP7O15540 132 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ORC5O43913 435 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ALX3O95076 343 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 C1orf105O95561 183 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 VIPR1P32241 457 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ZMYND11Q15326 602 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 HYAL4Q2M3T9 481 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 XKRXQ6PP77 449 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 NXPE4Q6UWF7 544 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 C16orf62Q7Z3J2 963 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 LRRC17Q8N6Y2 441 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 OR9A1PQ8NGU1 263 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SLC25A46Q96AG3 418 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 RAD51AP1Q96B01 352 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 MAP6Q96JE9 813 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF582Q96NG8 517 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 EFCAB11Q9BUY7 163 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 DPCDQ9BVM2 203 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 C3orf14Q9HBI5 128 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 WSB2Q9NYS7 404 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 IRAK3Q9Y616 596 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SCN3AQ9NY46 2000 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 A0A0B4J203 849 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 CIB4A0PJX0 185 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 NUPL2O15504 423 aaKnown RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 PCDH8O95206 1070 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 GYPBP06028 91 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 MSL3P1P0C860 447 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 UQCRC2P22695 453 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 WDR5P61964 334 aaKnown RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SP140Q13342 867 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ANKRD54Q6NXT1 300 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 DGLUCYQ7Z3D6 616 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 FAM129CQ86XR2 697 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 OR4N5Q8IXE1 308 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 KRT78Q8N1N4 520 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 CYB561A3Q8NBI2 242 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ANKK1Q8NFD2 765 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 PROKR2Q8NFJ6 384 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 FIBINQ8TAL6 211 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SPRYD4Q8WW59 207 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SMPDL3AQ92484 453 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 C12orf66Q96MD2 445 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 RNF208Q9H0X6 261 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ENAMQ9NRM1 1142 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SCN2AQ99250 2005 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 RPLP2P05387 115 aaKnown RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 RHAGQ02094 409 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 FCN2Q15485 313 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 WDR45BQ5MNZ6 344 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 COMTD1Q86VU5 262 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 VRK2Q86Y07 508 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 PEX5LQ8IYB4 626 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 OR8K5Q8NH50 307 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF431Q8TF32 576 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 C2orf15Q8WU43 125 aaKnown RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 TFGQ92734 400 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 UPRTQ96BW1 309 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF558Q96NG5 402 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 RAD9AQ99638 391 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 DDX31Q9H8H2 851 aaKnown RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 PLEKHB1Q9UF11 243 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-201ENST00000252597 SLC23A1Q9UHI7 598 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 A3GALT2U3KPV4 340 aa11.3□□□□□ -0.6
USHBP1-201ENST00000252597 PLPP1O14494 284 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 SOCS6O14544 535 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PCCBP05166 539 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 ZNF81P51508 661 aa11.29□□□□□ -0.6
USHBP1-201ENST00000252597 PNLIPRP1P54315 467 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms