RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ARSGQ96EG1 525 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 WDR34Q96EX3 536 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CNRIP1Q96F85 164 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 SMAD5Q99717 465 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 BARD1Q99728 777 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 NT5DC2Q9H857 520 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 ERVK-11Q9UQG0 969 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 A6NHS1 94 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 FESP07332 822 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 LSM3P62310 102 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 TNFRSF17Q02223 184 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 RUNX2Q13950 521 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 VEZF1Q14119 521 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 SLAMF7Q9NQ25 335 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PRDM7Q9NQW5 492 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 TICRRQ7Z2Z1 1910 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 H1F0P07305 194 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 HOXC4P09017 264 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PCGF2P35227 344 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 NSDHLQ15738 373 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 NHSL2Q5HYW2 709 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CHERPQ8IWX8 916 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CREB3L4Q8TEY5 395 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CDS1Q92903 461 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 ZNF347Q96SE7 839 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 TREX2Q9BQ50 279 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 SPRTNQ9H040 489 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 EXOSC4Q9NPD3 245 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PAPOLBQ9NRJ5 636 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 DAPP1Q9UN19 280 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 ANGPTL1O95841 491 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 CPMP14384 443 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 GSTM2P28161 218 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 CLEC12AQ5QGZ9 265 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 TMEM179BQ7Z7N9 219 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 CADM4Q8NFZ8 388 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 MKL2Q9ULH7 1088 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 SMIM11AP58511 58 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 TRMT12Q53H54 448 aaKnown RBP14.79□□□□□ -0.04
CPSF1-213ENST00000620219 PACRGLQ8N7B6 248 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 SLC38A4Q969I6 547 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 TCTN2Q96GX1 697 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 IL4I1Q96RQ9 567 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 FEVQ99581 238 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 PRR14Q9BWN1 585 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 ZSCAN32Q9NX65 697 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 NUDT6P53370 316 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 CDC42P60953 191 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 Q6ZPB1 254 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-213ENST00000620219 PTOV1Q86YD1 416 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 SLC16A11Q8NCK7 471 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 OR9Q2Q8NGE9 314 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 FAM174AQ8TBP5 190 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 POP5Q969H6 163 aaKnown RBP14.79□□□□□ -0.04
CPSF1-213ENST00000620219 FGF21Q9NSA1 209 aa14.79□□□□□ -0.04
CPSF1-213ENST00000620219 ACSS1Q9NUB1 689 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-213ENST00000620219 GPR75O95800 540 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 SAGP10523 405 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 CAPZBP47756 277 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 LSSP48449 732 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 TRA2BP62995 288 aaKnown RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 CNPY1Q3B7I2 92 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 TCTE1Q5JU00 501 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 PTCHD4Q6ZW05 846 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 RHBDD1Q8TEB9 315 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 PHOX2BQ99453 314 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 ERVK-19Q9WJR5 959 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 OR2A25A4D2G3 310 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 MAOAP21397 527 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 CCDC74AQ96AQ1 378 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 OR2A5Q96R48 311 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 POLR2J3Q9H1A7 115 aaKnown RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 IL1RAPQ9NPH3 570 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 RNF215Q9Y6U7 377 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 DNAH14Q0VDD8 3507 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 LOC100130705A0A1B0GUX0 176 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 PATE3B3GLJ2 98 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 FBLP22087 321 aaKnown RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 KCNC4Q03721 635 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 FLYWCH1Q4VC44 716 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 AHSA2Q719I0 299 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 CBLL1Q75N03 491 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 UBE3DQ7Z6J8 389 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 VWA5B2Q8N398 1253 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 OR52P1PQ8NH57 321 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 TAMM41Q96BW9 452 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 PHF12Q96QT6 1004 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 EVA1BQ9NVM1 165 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 RP1P56715 2156 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 M0R129 80 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 FGF17O60258 216 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 SCN2BO60939 215 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 RPLP0P05388 317 aaKnown RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 PIGAP37287 484 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 NXPH1P58417 271 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 STARD6P59095 220 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 CHRNEQ04844 493 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 DUSP7Q16829 419 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 KCTD8Q6ZWB6 473 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 GOLM1Q8NBJ4 401 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms