RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C1orf21Q9H246 121 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 EPHX3Q9H6B9 360 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 ZNF701Q9NV72 531 aaPredicted RBP19.49■□□□□ 0.71
UPF1-207ENST00000599848 EURLQ9NYK6 297 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 COPZ2Q9P299 210 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 TMEM59LQ9UK28 342 aa19.49■□□□□ 0.71
UPF1-207ENST00000599848 TRAPPC13A5PLN9 417 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 CD1DP15813 335 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 IL1RNP18510 177 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 RHCEP18577 417 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 IL4RP24394 825 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 ACADVLP49748 655 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 TRA2BP62995 288 aaKnown RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 ATAD3CQ5T2N8 411 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 APCDD1Q8J025 514 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 RRNAD1Q96FB5 475 aaKnown RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 LRIT1Q9P2V4 623 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 A0A087WUU8 490 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 POU3F4P49335 361 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 AGTR2P50052 363 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 ZNF765Q7L2R6 523 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 C7orf43Q8WVR3 580 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 HTRA1Q92743 480 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 ZNF317Q96PQ6 595 aaPredicted RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 TMED9Q9BVK6 235 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 SLC12A9Q9BXP2 914 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 MKLN1Q9UL63 735 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 PCDHGA10Q9Y5H3 936 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 TMEM265A0A087WTH1 108 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 MYADML2A6NDP7 307 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 GALR3O60755 368 aaPredicted RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 ARF3P61204 181 aaPredicted RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 NTHL1P78549 312 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 ARF1P84077 181 aaKnown RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 PTGR1Q14914 329 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 C6orf136Q5SQH8 315 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 SPAG16Q8N0X2 631 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 IGKV6D-21A0A0A0MT36 114 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 FUOMA2VDF0 154 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 C17orf105B2RV13 164 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 LATO43561 262 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 SLITRK5O94991 958 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 INMTO95050 263 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 SOX4Q06945 474 aaPredicted RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 EPGNQ6UW88 154 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 TXNDC15Q96J42 360 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 FUZQ9BT04 418 aa19.48■□□□□ 0.71
UPF1-207ENST00000599848 MOV10Q9HCE1 1003 aaKnown RBP19.48■□□□□ 0.71
UPF1-207ENST00000599848 LRRTM2O43300 516 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 AK4P27144 223 aaPredicted RBP19.47■□□□□ 0.71
UPF1-207ENST00000599848 MSX1P28360 303 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 NR0B1P51843 470 aaKnown RBP19.47■□□□□ 0.71
UPF1-207ENST00000599848 KLF1Q13351 362 aaPredicted RBP19.47■□□□□ 0.71
UPF1-207ENST00000599848 PRAMEF8Q5VWM4 474 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 PRAMEF7Q5VXH5 474 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 CRTC1Q6UUV9 634 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 PDSS2Q86YH6 399 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 MCATQ8IVS2 390 aaKnown RBP19.47■□□□□ 0.71
UPF1-207ENST00000599848 OR4N5Q8IXE1 308 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 LOC100130705A0A1B0GUX0 176 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 MAFKO60675 156 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 CBLP22681 906 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 FAM205BPQ63HN1 556 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 EID2Q8N6I1 236 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 OR13C3Q8NGS6 347 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 SORCS1Q8WY21 1168 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 METTL2AQ96IZ6 378 aaKnown RBP19.47■□□□□ 0.71
UPF1-207ENST00000599848 CHRDQ9H2X0 955 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 NAALAD2Q9Y3Q0 740 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 C2orf71A6NGG8 1288 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 SULT2B1O00204 365 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 ALDOBP05062 364 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 MAZP56270 477 aaKnown RBP19.47■□□□□ 0.71
UPF1-207ENST00000599848 CLLU1OSQ5K130 101 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 LRFN4Q6PJG9 635 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 TDHQ8IZJ6 230 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 CCDC71LQ8N9Z2 235 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 FCAMRQ8WWV6 532 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 TCTN2Q96GX1 697 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 XYLT2Q9H1B5 865 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 AQP9O43315 295 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 VMACQ2NL98 169 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 UBALD2Q8IYN6 164 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 CHPT1Q8WUD6 406 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 ZBTB26Q9HCK0 441 aa19.47■□□□□ 0.71
UPF1-207ENST00000599848 BPIP17213 487 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 AMY2BP19961 511 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 CDH15P55291 814 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 AIMP2Q13155 320 aaKnown RBP19.46■□□□□ 0.71
UPF1-207ENST00000599848 WSCD2Q2TBF2 565 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ZNF704Q6ZNC4 412 aaPredicted RBP19.46■□□□□ 0.71
UPF1-207ENST00000599848 TEX19Q8NA77 164 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 OR8K5Q8NH50 307 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 BCAS3Q9H6U6 928 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 TMEM45AQ9NWC5 275 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 WDPCPO95876 746 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 GRK1Q15835 563 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 ANKRD54Q6NXT1 300 aa19.46■□□□□ 0.71
UPF1-207ENST00000599848 MS4A15Q8N5U1 240 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms