RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MIEF1Q9NQG6 463 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 DEPPQ9NTK1 212 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 ENTPD4Q9Y227 616 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 POLEQ07864 2286 aa18.02■□□□□ 0.47
SHKBP1-221ENST00000599833 USP9XQ93008 2570 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 HDAC3O15379 428 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 SLC25A12O75746 678 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 PMP22Q01453 160 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 OC90Q02509 493 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 SLC25A25Q6KCM7 469 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 GPALPP1Q8IXQ4 340 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 FAM9CQ8IZT9 166 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 CYP4Z2PQ8N1L4 340 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 OR7A2PQ8NGA2 310 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 GRHL3Q8TE85 626 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 TP53INP1Q96A56 240 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 NTNG2Q96CW9 530 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 ERP27Q96DN0 273 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 MTERF3Q96E29 417 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 C7orf26Q96N11 449 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 GAL3ST4Q96RP7 486 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 KLHL1Q9NR64 748 aa18.01■□□□□ 0.47
SHKBP1-221ENST00000599833 HIVEP3Q5T1R4 2406 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 A0A087WV62 115 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 IFI6P09912 130 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 FBXO45P0C2W1 286 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 MAPK1P28482 360 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 MPIP34949 423 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 MC3RP41968 323 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 TDGF1P3P51864 188 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 NCBP2P52298 156 aaKnown RBP eCLIP18■□□□□ 0.47
SHKBP1-221ENST00000599833 CLDN8P56748 225 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 SRSF11Q05519 484 aaKnown RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 SLC9B1Q4ZJI4 515 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 IL20RBQ6UXL0 311 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 SLC29A4Q7RTT9 530 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 ZNF551Q7Z340 670 aaPredicted RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 GALNTL5Q7Z4T8 443 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 CAMKMTQ7Z624 323 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 ZGRF1Q86YA3 2104 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 OR2L13Q8N349 312 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 SLC15A4Q8N697 577 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 PIWIL2Q8TC59 973 aaKnown RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 CKAP2Q8WWK9 683 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 COQ8BQ96D53 544 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 VSTM2LQ96N03 204 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 FRMD6Q96NE9 622 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 BBS4Q96RK4 519 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 SLX1AQ9BQ83 275 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 NXF5Q9H1B4 397 aaKnown RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 WDR55Q9H6Y2 383 aaPredicted RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 NOP53Q9NZM5 478 aaKnown RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 COPG1Q9Y678 874 aaKnown RBP18■□□□□ 0.47
SHKBP1-221ENST00000599833 BAHCC1Q9P281 2608 aa18■□□□□ 0.47
SHKBP1-221ENST00000599833 A0A0G2JMM0 328 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 C2orf92A0A1B0GVN3 265 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 A0A1W2PPB8 328 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 A0A1W2PRS3 328 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 KIR3DP1A8MWS1 328 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 J3QKU1 62 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 UPK1AO00322 258 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 PDPK1O15530 556 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 KITP10721 976 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 LAMP1P11279 417 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 EPHA3P29320 983 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 NR0B1P51843 470 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 RNFT1Q5M7Z0 435 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 TMEM107Q6UX40 140 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 NPSR1Q6W5P4 371 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 RGS9BPQ6ZS82 235 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 TMEM156Q8N614 296 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 GOLGA6L1Q8N7Z2 621 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 FAR1Q8WVX9 515 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 ASB15Q8WXK1 588 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 HOXB13Q92826 284 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 PPCDCQ96CD2 204 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 ELP4Q96EB1 424 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 BTBD9Q96Q07 612 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 PROK2Q9HC23 129 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 PFDN4Q9NQP4 134 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 SIRT3Q9NTG7 399 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 ACSS1Q9NUB1 689 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 GIMAP4Q9NUV9 329 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 NTMQ9P121 344 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 C19orf53Q9UNZ5 99 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 ERVK-11Q9UQG0 969 aa17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 GPR55Q9Y2T6 319 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-221ENST00000599833 PINLYPA6NC86 204 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 A8MVJ9 347 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 TCP11X1B4DZS4 312 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 TO15178 435 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 SLITRK5O94991 958 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CT45A8P0DMV1 189 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CT45A9P0DMV2 189 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CCL3P10147 92 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CD46P15529 392 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 LBPP18428 481 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 MST1P26927 711 aa17.98■□□□□ 0.47
SHKBP1-221ENST00000599833 CDK9P50750 372 aaKnown RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms