RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 DCNP07585 359 aaKnown RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 CCDC159P0C7I6 412 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 SH3BGRP55822 239 aaPredicted RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 NUP107P57740 925 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 SNRPNP63162 240 aaKnown RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 HPCAP84074 193 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 IL1RL1Q01638 556 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 NPRL3Q12980 569 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 FAM53BQ14153 422 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 LTB4RQ15722 352 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 EXOC3L2Q2M3D2 409 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 DEFB133Q30KQ1 61 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 TCTE1Q5JU00 501 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 MFSD12Q6NUT3 480 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ZNF773Q6PK81 442 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 C16orf62Q7Z3J2 963 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 TAGAPQ8N103 731 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CHDHQ8NE62 594 aaPredicted RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 OR7G2Q8NG99 324 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ZNF675Q8TD23 568 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 KAT2AQ92830 837 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ZNF566Q969W8 418 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 GIMAP5Q96F15 307 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 C16orf58Q96GQ5 468 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ZNF285Q96NJ3 590 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 FEVQ99581 238 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 PITX2Q99697 317 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 MAP3K3Q99759 626 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 PAPOLBQ9NRJ5 636 aaKnown RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 NDRG4Q9ULP0 352 aaKnown RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 TMCC3Q9ULS5 477 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 C19orf53Q9UNZ5 99 aaPredicted RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 CLCA2Q9UQC9 943 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 MRPS33Q9Y291 106 aaKnown RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 VGLL3A8MV65 326 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 SYT5O00445 386 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 PLOD3O60568 738 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 OXSR1O95747 527 aaPredicted RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 RECKO95980 971 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CHRM4P08173 479 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CRHBPP24387 322 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 MLLT3P42568 568 aaPredicted RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 EMP3P54852 163 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CDH15P55291 814 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CXCR4P61073 352 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 OLR1P78380 273 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 SHC2P98077 582 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CD47Q08722 323 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 FUT5Q11128 374 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CYP27C1Q4G0S4 372 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ZNF628Q5EBL2 1059 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 BROXQ5VW32 411 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 HEPHL1Q6MZM0 1159 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 PRSS41Q7RTY9 318 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 C11orf74Q86VG3 221 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 FKBP10Q96AY3 582 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 DHRS1Q96LJ7 313 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ALPK1Q96QP1 1244 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 TSC22D3Q99576 134 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 YIPF4Q9BSR8 244 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 YIPF3Q9GZM5 350 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ADNPQ9H2P0 1102 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 CACYBPQ9HB71 228 aaKnown RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 PDE7BQ9NP56 450 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 EQTNQ9NQ60 294 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ACAD8Q9UKU7 415 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 DSPPQ9NZW4 1301 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 EME2A4GXA9 379 aaPredicted RBP13.3□□□□□ -0.28
LIG3-205ENST00000585941 E9PQ18 207 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 NUDT21O43809 227 aaKnown RBP13.3□□□□□ -0.28
LIG3-205ENST00000585941 LGI1O95970 557 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 ALPPP05187 535 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 RNH1P13489 461 aaKnown RBP13.3□□□□□ -0.28
LIG3-205ENST00000585941 ELK4P28324 431 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 GPR3P46089 330 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 YAP1P46937 504 aaKnown RBP13.3□□□□□ -0.28
LIG3-205ENST00000585941 PPM1FP49593 454 aaPredicted RBP13.3□□□□□ -0.28
LIG3-205ENST00000585941 CLK3P49761 638 aaKnown RBP13.3□□□□□ -0.28
LIG3-205ENST00000585941 IL5RAQ01344 420 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 RAPSNQ13702 412 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 C6orf132Q5T0Z8 1188 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 TCTN3Q6NUS6 607 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 PARP8Q8N3A8 854 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 LINC00471Q8N535 108 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 SLC5A8Q8N695 610 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 OR6C4Q8NGE1 309 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 HRASLS5Q96KN8 279 aa13.3□□□□□ -0.28
LIG3-205ENST00000585941 J3KTA2 159 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 SGK494L7N484 410 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 CHST10O43529 356 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 FGF17O60258 216 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 DNAJB6O75190 326 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 RDH16O75452 317 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 NSA2O95478 260 aaKnown RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 ZBTB11O95625 1053 aaPredicted RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 AK1P00568 194 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 H1F0P07305 194 aaKnown RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 SLC35E2P0CK97 266 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 GNSP15586 552 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 EEF1B2P24534 225 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms