RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CYB561D2O14569 222 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 RTL8CO15255 209 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 FCGR3AP08637 254 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 OR9G9P0C7N8 305 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 CHRNA3P32297 505 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 HSPA1LP34931 641 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 CD86P42081 329 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 IL9RQ01113 521 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 MS4A2Q01362 244 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 GABPB1Q06547 395 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 RAPSNQ13702 412 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 ZSWIM7Q19AV6 140 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 ZNF528Q3MIS6 628 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 GLIPR1L2Q4G1C9 344 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 HSP90AA5PQ58FG0 334 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 VWA2Q5GFL6 755 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 SEL1L3Q68CR1 1132 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 REP15Q6BDI9 236 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 ARSKQ6UWY0 536 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 ZNF497Q6ZNH5 498 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 GPBP1Q86WP2 473 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 KRTAP7-1Q8IUC3 87 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 LRRC49Q8IUZ0 686 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 CERS5Q8N5B7 392 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 OR4F5Q8NH21 305 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 FCGR1BQ92637 280 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 RBM18Q96H35 190 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 ZNF597Q96LX8 424 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 DEFB118Q96PH6 123 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 HSD17B14Q9BPX1 270 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 NGBQ9NPG2 151 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 IL20RAQ9UHF4 553 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 NUDCQ9Y266 331 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 CPQQ9Y646 472 aa3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-209ENST00000583441 FAM230AA0A1W2PPH8 454 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 E9PMD0 336 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SGK494L7N484 410 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 LGALS8O00214 317 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 EI24O14681 340 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 STK17BO94768 372 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 NDUFA7O95182 113 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SNRPCP09234 159 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 HSD17B1P14061 328 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 PRDX6P30041 224 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 MAT2AP31153 395 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 PRDX2P32119 198 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ATP4BP51164 291 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SLC7A2P52569 658 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ACY1Q03154 408 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 PAX8Q06710 450 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 BNIP1Q12981 228 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SCGB2A2Q13296 93 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ITPK1Q13572 414 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 KARSQ15046 597 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SIX1Q15475 284 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 PARP6Q2NL67 630 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 UNC50Q53HI1 259 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 UNC5DQ6UXZ4 953 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 TMEM26Q6ZUK4 368 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 PAQR9Q6ZVX9 377 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ADGRD2Q7Z7M1 963 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 RPAINQ86UA6 219 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 LUZP1Q86V48 1076 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 AMZ2Q86W34 360 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ARL14Q8N4G2 192 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 C4orf32Q8N8J7 132 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 MINDY2Q8NBR6 621 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ZNF397Q8NF99 534 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SSC4DQ8WTU2 575 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 TBC1D31Q96DN5 1066 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 MRPL38Q96DV4 380 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 CCDC51Q96ER9 411 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 CABLES2Q9BTV7 478 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 GPR174Q9BXC1 333 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 NLNQ9BYT8 704 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 LRRCC1Q9C099 1032 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 LIME1Q9H400 295 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 RPAP3Q9H6T3 665 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 ROPN1Q9HAT0 212 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 POLD4Q9HCU8 107 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 STARD5Q9NSY2 213 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 SENP1Q9P0U3 644 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 IKZF3Q9UKT9 509 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 EMCNQ9ULC0 261 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 AURKCQ9UQB9 309 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 MRPL11Q9Y3B7 192 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 KIF3AQ9Y496 699 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 U3KQV3 271 aa3.02□□□□□ -1.93
SMCHD1-209ENST00000583441 FOXI3A8MTJ6 420 aaPredicted RBP3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 CLDN3O15551 220 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 NUDT14O95848 222 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 CCDC159P0C7I6 412 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 SLC35G4P0C7Q5 338 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 RRASP10301 218 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 DESP17661 470 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 RPA1P27694 616 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 PTPN6P29350 595 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 SGSHP51688 502 aa3.01□□□□□ -1.93
SMCHD1-209ENST00000583441 TRA2BP62995 288 aaKnown RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms