RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SLC17A7Q9P2U7 560 aa13.67□□□□□ -0.22
SS18-212ENST00000579061 PRODH2Q9UF12 536 aa13.67□□□□□ -0.22
SS18-212ENST00000579061 TINAGQ9UJW2 476 aa13.67□□□□□ -0.22
SS18-212ENST00000579061 ENTPD4Q9Y227 616 aa13.67□□□□□ -0.22
SS18-212ENST00000579061 CCL27Q9Y4X3 112 aa13.67□□□□□ -0.22
SS18-212ENST00000579061 CHCHD2Q9Y6H1 151 aaPredicted RBP13.67□□□□□ -0.22
SS18-212ENST00000579061 FREM3P0C091 2139 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 A0A1B0GTH9 108 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 G3V3Y1 287 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 ACOX3O15254 700 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 RGS14O43566 566 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 TYROBPO43914 113 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 SPAG7O75391 227 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 CBX7O95931 251 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 CHEK2O96017 543 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 IGHG3P01860 377 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 ESRRAP11474 423 aaPredicted RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 AGAP20933 346 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 PTGS2P35354 604 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 SERPINB5P36952 375 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 DNASE1L1P49184 302 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 RPP38P78345 283 aaKnown RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 C2orf80Q0P641 193 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 KIAA0040Q15053 153 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 RPS6KA2Q15349 733 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 ZNF628Q5EBL2 1059 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 KANK2Q63ZY3 851 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 CLEC6AQ6EIG7 209 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 IKBIPQ70UQ0 350 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 FGD2Q7Z6J4 655 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 DOLPP1Q86YN1 238 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 CCDC116Q8IYX3 515 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 FAM109AQ8N4B1 249 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 ADCY4Q8NFM4 1077 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 FAM57AQ8TBR7 257 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 PHF10Q8WUB8 498 aaKnown RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 ITLN2Q8WWU7 325 aaPredicted RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 EBPLQ9BY08 206 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 EML4Q9HC35 981 aaKnown RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 PFDN4Q9NQP4 134 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 C1orf109Q9NX04 203 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 BCAP29Q9UHQ4 241 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 SH3BGRL2Q9UJC5 107 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 CNOT11Q9UKZ1 510 aaKnown RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 BOKQ9UMX3 212 aaPredicted RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 MEMO1Q9Y316 297 aa13.66□□□□□ -0.22
SS18-212ENST00000579061 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.66□□□□□ -0.22
SS18-212ENST00000579061 PHF3Q92576 2039 aaKnown RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 A0A1B0GVC2 190 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 CYSRT1A8MQ03 144 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 FAM166BA8MTA8 275 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 E9PLN8 166 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 CDC40O60508 579 aaKnown RBP eCLIP13.65□□□□□ -0.22
SS18-212ENST00000579061 SEC22BO75396 215 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 SLITRK5O94991 958 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 DRD5P21918 477 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 MPIP34949 423 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 PIGAP37287 484 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 PPICP45877 212 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 EMDP50402 254 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 ZNF844Q08AG5 666 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 DUSP8Q13202 625 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 ART3Q13508 389 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 EXOSC7Q15024 291 aaKnown RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 KRT71Q3SY84 523 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 TRMT12Q53H54 448 aaKnown RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 NOXRED1Q6NXP6 359 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 FAM180BQ6P0A1 224 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 TMEM81Q6P7N7 255 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 XKRXQ6PP77 449 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 Q6ZSR9 355 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 CROCCP2Q86T23 111 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 CLYBLQ8N0X4 340 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 TMEM251Q8N6I4 163 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 OR10G3Q8NGC4 313 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 SPPL2AQ8TCT8 520 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 EXOSC8Q96B26 276 aaKnown RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 LCORQ96JN0 433 aaPredicted RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 FCRL1Q96LA6 429 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 BBS4Q96RK4 519 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 VKORC1Q9BQB6 163 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 MECRQ9BV79 373 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 STMN4Q9H169 189 aaPredicted RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 NXF5Q9H1B4 397 aaKnown RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 DEFB127Q9H1M4 99 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 LRTM1Q9HBL6 345 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 PROK2Q9HC23 129 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 SSU72Q9NP77 194 aaKnown RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 ZFP64Q9NPA5 681 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 QPCTLQ9NXS2 382 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 DTX4Q9Y2E6 619 aa13.65□□□□□ -0.22
SS18-212ENST00000579061 POLR3HQ9Y535 204 aaPredicted RBP13.65□□□□□ -0.22
SS18-212ENST00000579061 NBPF19A0A087WUL8 3843 aa13.64□□□□□ -0.23
SS18-212ENST00000579061 OR14I1A6ND48 311 aa13.64□□□□□ -0.23
SS18-212ENST00000579061 MYO1GB0I1T2 1018 aa13.64□□□□□ -0.23
SS18-212ENST00000579061 RGS16O15492 202 aaPredicted RBP13.64□□□□□ -0.23
SS18-212ENST00000579061 SUSD5O60279 629 aa13.64□□□□□ -0.23
SS18-212ENST00000579061 PLOD3O60568 738 aa13.64□□□□□ -0.23
SS18-212ENST00000579061 BPGMP07738 259 aa13.64□□□□□ -0.23
SS18-212ENST00000579061 CREB1P16220 341 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms