RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CSHL1Q14406 222 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 VAX1Q5SQQ9 334 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 PPP1R21Q6ZMI0 780 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 RNF111Q6ZNA4 994 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 SDCCAG8Q86SQ7 713 aaPredicted RBP14.39□□□□□ -0.11
VPS53-218ENST00000575207 SPNS2Q8IVW8 549 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 KLHDC8AQ8IYD2 350 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 UBQLNLQ8IYU4 475 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 FBXL14Q8N1E6 418 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 RADILQ96JH8 1075 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 DGAT2Q96PD7 388 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 SERINC2Q96SA4 455 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 NUP62CLQ9H1M0 184 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 ESM1Q9NQ30 184 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 CHRAC1Q9NRG0 131 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 USP22Q9UPT9 525 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 C2orf72A6NCS6 295 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 LRIT2A6NDA9 550 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 PFDN6O15212 129 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 GCM2O75603 506 aaPredicted RBP14.38□□□□□ -0.11
VPS53-218ENST00000575207 AQP8O94778 261 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 IL2RGP31785 369 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 HNRNPH1P31943 449 aaKnown RBP14.38□□□□□ -0.11
VPS53-218ENST00000575207 SNTA1Q13424 505 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 P2RY6Q15077 328 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 RBBP5Q15291 538 aaKnown RBP14.38□□□□□ -0.11
VPS53-218ENST00000575207 MRNIPQ6NTE8 343 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 PIWIL4Q7Z3Z4 852 aaKnown RBP14.38□□□□□ -0.11
VPS53-218ENST00000575207 STK32CQ86UX6 486 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 RHOT2Q8IXI1 618 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 ZNF619Q8N2I2 560 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 NEIL2Q969S2 332 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 RBM18Q96H35 190 aaKnown RBP14.38□□□□□ -0.11
VPS53-218ENST00000575207 HBEGFQ99075 208 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 OSBPL11Q9BXB4 747 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 MMP27Q9H306 513 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 MYOZ1Q9NP98 299 aaPredicted RBP14.38□□□□□ -0.11
VPS53-218ENST00000575207 PDE10AQ9Y233 779 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 SPEF1Q9Y4P9 236 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 EXPH5Q8NEV8 1989 aa14.38□□□□□ -0.11
VPS53-218ENST00000575207 ARFGEF3Q5TH69 2177 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GOLGA8QA0A0J9YX86 632 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 C2orf92A0A1B0GVN3 265 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GOLGA8OA6NCC3 632 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 BTNL10A8MVZ5 291 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GOLGA8NF8WBI6 632 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 H0YC42 278 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GOLGA8MH3BSY2 632 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GOLGA8RI6L899 631 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 ABCD4O14678 606 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 PIN1P1O15428 100 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 ZIC3O60481 467 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 FCGR2AP12318 317 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 BMP4P12644 408 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GRIA1P42261 906 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 SUCLG1P53597 346 aaKnown RBP14.37□□□□□ -0.11
VPS53-218ENST00000575207 TPD52P55327 224 aaPredicted RBP14.37□□□□□ -0.11
VPS53-218ENST00000575207 B3GALT5-AS1P59052 145 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 UBA52P62987 128 aaKnown RBP14.37□□□□□ -0.11
VPS53-218ENST00000575207 CTBP1Q13363 440 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 Q6ZPA2 131 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 EXOC3L1Q86VI1 746 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 FAM71DQ8N9W8 422 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 SLC5A11Q8WWX8 675 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 PPWD1Q96BP3 646 aaKnown RBP14.37□□□□□ -0.11
VPS53-218ENST00000575207 GMPPAQ96IJ6 420 aaPredicted RBP14.37□□□□□ -0.11
VPS53-218ENST00000575207 USB1Q9BQ65 265 aaKnown RBP14.37□□□□□ -0.11
VPS53-218ENST00000575207 AIF1LQ9BQI0 150 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 GALNT9Q9HCQ5 603 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 TREX1Q9NSU2 369 aa14.37□□□□□ -0.11
VPS53-218ENST00000575207 ERI2A8K979 691 aaKnown RBP14.36□□□□□ -0.11
VPS53-218ENST00000575207 SS18L1O75177 396 aaPredicted RBP14.36□□□□□ -0.11
VPS53-218ENST00000575207 CLPSP04118 112 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 ABCB1P08183 1280 aaPredicted RBP14.36□□□□□ -0.11
VPS53-218ENST00000575207 TACSTD2P09758 323 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 COL6A2P12110 1019 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 EPHA1P21709 976 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 CERS1P27544 350 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 GCH1P30793 250 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 MARCKSL1P49006 195 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 HERVK_113P63132 956 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 ERVK-8P63133 956 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 BIKQ13323 160 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 SFRP5Q5T4F7 317 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 UGT2A3Q6UWM9 527 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 PLCZ1Q86YW0 608 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 GABRG1Q8N1C3 465 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 OR56A3Q8NH54 315 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 TCF12Q99081 682 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 SUCNR1Q9BXA5 334 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 ERVK-6Q9BXR3 956 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 POTEKPQ9BYX7 375 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 LYRM4Q9HD34 91 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 ADAMTS6Q9UKP5 1117 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 ERVK-19Q9WJR5 959 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 MED16Q9Y2X0 877 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 FKBP7Q9Y680 259 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 PMF1-BGLAPU3KQ54 211 aa14.36□□□□□ -0.11
VPS53-218ENST00000575207 PABPN1LA6NDY0 278 aaKnown RBP14.35□□□□□ -0.11
VPS53-218ENST00000575207 PJA2O43164 708 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms