RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RGS11O94810 467 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 GNRH1P01148 92 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 HBQ1P09105 142 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 HOXD10P28358 340 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 HMGCLP35914 325 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 SRP9P49458 86 aaKnown RBP9.09□□□□□ -0.95
CCDC40-212ENST00000574799 WNT4P56705 351 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 MLIPQ5VWP3 458 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 FRG2Q64ET8 278 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 FAM198BQ6UWH4 519 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 UBE2R2Q712K3 238 aaPredicted RBP9.09□□□□□ -0.95
CCDC40-212ENST00000574799 PTOV1Q86YD1 416 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 NPAS3Q8IXF0 933 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 LINC00518Q8N0U6 118 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 OR10Z1Q8NGY1 313 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 ZNF671Q8TAW3 534 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 CMTM7Q96FZ5 175 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 FRG2BQ96QU4 278 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 SLC35A5Q9BS91 424 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 TMEM175Q9BSA9 504 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 NDUFB11Q9NX14 153 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 MARCH2Q9P0N8 246 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 PLEKHB1Q9UF11 243 aaPredicted RBP9.09□□□□□ -0.95
CCDC40-212ENST00000574799 GLS2Q9UI32 602 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 SLC22A14Q9Y267 594 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 WDFY3Q8IZQ1 3526 aa9.09□□□□□ -0.95
CCDC40-212ENST00000574799 FXYD6-FXYD2A0A087WZ82 144 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 KRBOX1C9JBD0 128 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 PRRG1O14668 218 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 ZNF197O14709 1029 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 MMP20O60882 483 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 EPOP01588 193 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 HOXD4P09016 255 aaPredicted RBP9.09□□□□□ -0.96
CCDC40-212ENST00000574799 PEPDP12955 493 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 RHCEP18577 417 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 PSMA3P25788 255 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 FNTBP49356 437 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 STK19P49842 368 aaPredicted RBP9.09□□□□□ -0.96
CCDC40-212ENST00000574799 ERVK-25P63136 954 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 RGNQ15493 299 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 ANXA8L1Q5VT79 327 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 KIAA1161Q6NSJ0 714 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 RBFAQ8N0V3 343 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 DUSP18Q8NEJ0 188 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 TBC1D20Q96BZ9 403 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 SFXN2Q96NB2 322 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 USB1Q9BQ65 265 aaKnown RBP9.09□□□□□ -0.96
CCDC40-212ENST00000574799 FUZQ9BT04 418 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 FXYD6Q9H0Q3 95 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 B3GAT2Q9NPZ5 323 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 DNAJC11Q9NVH1 559 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 ELOVL2Q9NXB9 296 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 MRPL15Q9P015 296 aaKnown RBP9.09□□□□□ -0.96
CCDC40-212ENST00000574799 FNIP2Q9P278 1114 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 PCDHB7Q9Y5E2 793 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 FKBP7Q9Y680 259 aa9.09□□□□□ -0.96
CCDC40-212ENST00000574799 A0A1B0GVI7 797 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 ANKDD1BA6NHY2 528 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 GTPBP1O00178 669 aaKnown RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 INSIG1O15503 277 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 AKAP8O43823 692 aaKnown RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 KLK8O60259 260 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 TSPAN12O95859 305 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 GBAP04062 536 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 GPX2P18283 190 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CXCL3P19876 107 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 VIPR1P32241 457 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SWI5Q1ZZU3 235 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CLEC12AQ5QGZ9 265 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SBSNQ6UWP8 590 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 ZNF551Q7Z340 670 aaPredicted RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SLC30A8Q8IWU4 369 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CARNMT1Q8N4J0 409 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 OR6K2Q8NGY2 324 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 GANCQ8TET4 914 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 UCN3Q969E3 161 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 FBXO32Q969P5 355 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 EID2BQ96D98 161 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 C7orf34Q96L11 122 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CRISPLD2Q9H0B8 497 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SLC32A1Q9H598 525 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 TBX21Q9UL17 535 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 DIMT1Q9UNQ2 313 aaKnown RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 GPR52Q9Y2T5 361 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 LAMA1P25391 3075 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 ZNF98A6NK75 572 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 PRAMEF11O60813 436 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 PQBP1O60828 265 aaKnown RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 LILRB3O75022 631 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CH25HO95992 272 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CFDP00746 253 aaPredicted RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SRPRAP08240 638 aaKnown RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 ALPIP09923 528 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CACNG1Q06432 222 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 GINS1Q14691 196 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 CRB2Q5IJ48 1285 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SFRP4Q6FHJ7 346 aaPredicted RBP9.08□□□□□ -0.96
CCDC40-212ENST00000574799 SLC39A5Q6ZMH5 540 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 IKBIPQ70UQ0 350 aa9.08□□□□□ -0.96
CCDC40-212ENST00000574799 TRILQ7L0X0 811 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 150.7 ms