RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 FAM162AQ96A26 154 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 GIMAP5Q96F15 307 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 C16orf58Q96GQ5 468 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 ACTRT3Q9BYD9 372 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 VN1R1Q9GZP7 353 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 SLC26A1Q9H2B4 701 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 RASSF4Q9H2L5 321 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 OR51I1Q9H343 314 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 SERHL2Q9H4I8 314 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 DCLRE1BQ9H816 532 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 ANKRA2Q9H9E1 313 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 S100A14Q9HCY8 104 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 A4GALTQ9NPC4 353 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 PISDQ9UG56 409 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 GPN3Q9UHW5 284 aaPredicted RBP12.79□□□□□ -0.36
CCDC40-209ENST00000573474 ZNF639Q9UID6 485 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 PCDHGA3Q9Y5H0 932 aa12.79□□□□□ -0.36
CCDC40-209ENST00000573474 TCRBV5S2A0A599 114 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 TCRBV16S1A1N1A0A5B0 115 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 TMEM247A6NEH6 219 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 DUXAA6NLW8 204 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 HMGN4O00479 90 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 TM4SF5O14894 197 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 ASNA1O43681 348 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 DYRK3O43781 588 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 COQ9O75208 318 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 SLC34A2O95436 690 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 HEXBP07686 556 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 CYC1P08574 325 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 OR12D1P0DN82 309 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 UMPSP11172 480 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 CEACAM1P13688 526 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 S1PR1P21453 382 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 KDELR2P33947 212 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 MAN2A2P49641 1150 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 AP2B1P63010 937 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 MRPS22P82650 360 aaKnown RBP12.78□□□□□ -0.36
CCDC40-209ENST00000573474 CDK6Q00534 326 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 SCARB2Q14108 478 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 ZNF267Q14586 743 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-209ENST00000573474 NSDHLQ15738 373 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 NKG7Q16617 165 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 INTS11Q5TA45 600 aaKnown RBP12.78□□□□□ -0.36
CCDC40-209ENST00000573474 MLIPQ5VWP3 458 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 LCN10Q6JVE6 187 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 MFSD12Q6NUT3 480 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 CDC73Q6P1J9 531 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 ZCCHC12Q6PEW1 402 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 LAPTM4BQ86VI4 370 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 TMEM151BQ8IW70 566 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 LGI4Q8N135 537 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 METTL25Q8N6Q8 603 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 NFKBIDQ8NI38 313 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 DOK4Q8TEW6 326 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 XAGE5Q8WWM1 108 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 PYDC1Q8WXC3 89 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 MR1Q95460 341 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 TSLPQ969D9 159 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 MAL2Q969L2 176 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 DUS3LQ96G46 650 aaKnown RBP12.78□□□□□ -0.36
CCDC40-209ENST00000573474 YIPF4Q9BSR8 244 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 EQTNQ9NQ60 294 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 PNO1Q9NRX1 252 aaKnown RBP12.78□□□□□ -0.36
CCDC40-209ENST00000573474 NXT1Q9UKK6 140 aaKnown RBP12.78□□□□□ -0.36
CCDC40-209ENST00000573474 ANGPT4Q9Y264 503 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 PCDHGA8Q9Y5G5 932 aa12.78□□□□□ -0.36
CCDC40-209ENST00000573474 PCNX2A6NKB5 2137 aa12.77□□□□□ -0.36
CCDC40-209ENST00000573474 C5orf58C9J3I9 102 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 C9J4A7 227 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 STK17BO94768 372 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 SOX30O94993 753 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 CBX7O95931 251 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 AGR2O95994 175 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 GPIP06744 558 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 TFPTP0C1Z6 253 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 FUT7Q11130 342 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 GNA13Q14344 377 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 MYBPC3Q14896 1274 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 EXOSC7Q15024 291 aaKnown RBP12.77□□□□□ -0.37
CCDC40-209ENST00000573474 RCN1Q15293 331 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 ELAVL1Q15717 326 aaKnown RBP12.77□□□□□ -0.37
CCDC40-209ENST00000573474 TMEM164Q5U3C3 297 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 REEP3Q6NUK4 255 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 MRPL14Q6P1L8 145 aaKnown RBP12.77□□□□□ -0.37
CCDC40-209ENST00000573474 CCDC80Q76M96 950 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 TMPRSS12Q86WS5 348 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 EID3Q8N140 333 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 ENDOVQ8N8Q3 282 aaKnown RBP12.77□□□□□ -0.37
CCDC40-209ENST00000573474 GALNT6Q8NCL4 622 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 SIMC1Q8NDZ2 872 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 OR7G1Q8NGA0 311 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 OR52R1Q8NGF1 315 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 ADAMTS15Q8TE58 950 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 PTPMT1Q8WUK0 201 aaPredicted RBP12.77□□□□□ -0.37
CCDC40-209ENST00000573474 RAB8BQ92930 207 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 OR7D2Q96RA2 312 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 WDR54Q9H977 334 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 RNPEPL1Q9HAU8 725 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 ADAP2Q9NPF8 381 aa12.77□□□□□ -0.37
CCDC40-209ENST00000573474 DCAF13Q9NV06 445 aaKnown RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms