RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MANSC1Q9H8J5 431 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 LIN28AQ9H9Z2 209 aaKnown RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 ATAD3AQ9NVI7 634 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ARHGAP21Q5T5U3 1957 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 ZNF407Q9C0G0 2248 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 TRPC5OSA6NMA1 111 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 MYO1GB0I1T2 1018 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 PYCARD-AS1I3L0S3 204 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 ACOT7O00154 380 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 TP53I11O14683 189 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 KLF11O14901 512 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 SCAMP2O15127 329 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 LRATO95237 230 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 CLPSP04118 112 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 P04436 131 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 JUNP05412 331 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 IFI6P09912 130 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 BCKDHAP12694 445 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 ZNF24P17028 368 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 GPX3P22352 226 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 GPC1P35052 558 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 ST13P50502 369 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 NR0B1P51843 470 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 MRPS35P82673 323 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 EXOSC7Q15024 291 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 RPS6KA2Q15349 733 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 LTB4RQ15722 352 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 PIGGQ5H8A4 983 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 C6orf136Q5SQH8 315 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 CES4AQ5XG92 561 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 FAM111BQ6SJ93 734 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 C16orf47Q6ZP98 133 aaPredicted RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 GK5Q6ZS86 529 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 NATD1Q8N6N6 113 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 FAM13CQ8NE31 585 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 OR52R1Q8NGF1 315 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 CLHC1Q8NHS4 586 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 DOK4Q8TEW6 326 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 GFM2Q969S9 779 aaKnown RBP12.01□□□□□ -0.49
CLK3-224ENST00000568605 EGLN2Q96KS0 407 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 FRMD6Q96NE9 622 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 SLX1AQ9BQ83 275 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 HES7Q9BYE0 225 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 SACM1LQ9NTJ5 587 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 ASIC5Q9NY37 505 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 TAS2R9Q9NYW1 312 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 SH3BP4Q9P0V3 963 aa12.01□□□□□ -0.49
CLK3-224ENST00000568605 TENM4Q6N022 2769 aa12□□□□□ -0.49
CLK3-224ENST00000568605 A0A087WV62 115 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ASPDHA6ND91 283 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ANKUB1A6NFN9 424 aa12□□□□□ -0.49
CLK3-224ENST00000568605 TCP11X1B4DZS4 312 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ACOX3O15254 700 aa12□□□□□ -0.49
CLK3-224ENST00000568605 AKAP10O43572 662 aa12□□□□□ -0.49
CLK3-224ENST00000568605 PLOD3O60568 738 aa12□□□□□ -0.49
CLK3-224ENST00000568605 SNNO75324 88 aaPredicted RBP12□□□□□ -0.49
CLK3-224ENST00000568605 CBX7O95931 251 aa12□□□□□ -0.49
CLK3-224ENST00000568605 FBXO45P0C2W1 286 aa12□□□□□ -0.49
CLK3-224ENST00000568605 PCSK2P16519 638 aa12□□□□□ -0.49
CLK3-224ENST00000568605 MEOX1P50221 254 aa12□□□□□ -0.49
CLK3-224ENST00000568605 PMP22Q01453 160 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ALDH6A1Q02252 535 aaKnown RBP12□□□□□ -0.49
CLK3-224ENST00000568605 SRSF11Q05519 484 aaKnown RBP12□□□□□ -0.49
CLK3-224ENST00000568605 DUSP2Q05923 314 aa12□□□□□ -0.49
CLK3-224ENST00000568605 RBPJQ06330 500 aa12□□□□□ -0.49
CLK3-224ENST00000568605 MGAT2Q10469 447 aa12□□□□□ -0.49
CLK3-224ENST00000568605 PDE7AQ13946 482 aa12□□□□□ -0.49
CLK3-224ENST00000568605 TTMPQ5BVD1 217 aa12□□□□□ -0.49
CLK3-224ENST00000568605 IL23RQ5VWK5 629 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ZNF227Q86WZ6 799 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ZNF441Q8N8Z8 693 aa12□□□□□ -0.49
CLK3-224ENST00000568605 LRRC8CQ8TDW0 803 aa12□□□□□ -0.49
CLK3-224ENST00000568605 HSPBAP1Q96EW2 488 aa12□□□□□ -0.49
CLK3-224ENST00000568605 LCORQ96JN0 433 aaPredicted RBP12□□□□□ -0.49
CLK3-224ENST00000568605 PPP1R36Q96LQ0 422 aa12□□□□□ -0.49
CLK3-224ENST00000568605 C3orf30Q96M34 536 aa12□□□□□ -0.49
CLK3-224ENST00000568605 TAAR6Q96RI8 345 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ITPAQ9BY32 194 aa12□□□□□ -0.49
CLK3-224ENST00000568605 NUF2Q9BZD4 464 aa12□□□□□ -0.49
CLK3-224ENST00000568605 C20orf27Q9GZN8 174 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ZNF395Q9H8N7 513 aaPredicted RBP12□□□□□ -0.49
CLK3-224ENST00000568605 DDX18Q9NVP1 670 aaKnown RBP12□□□□□ -0.49
CLK3-224ENST00000568605 GIMAP2Q9UG22 337 aa12□□□□□ -0.49
CLK3-224ENST00000568605 ZNF639Q9UID6 485 aa12□□□□□ -0.49
CLK3-224ENST00000568605 PHF3Q92576 2039 aaKnown RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 DIDO1Q9BTC0 2240 aaKnown RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 FRG2CA6NGY1 282 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 TFECO14948 347 aaPredicted RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 HDAC3O15379 428 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 PEX1O43933 1283 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 NADKO95544 446 aaPredicted RBP11.99□□□□□ -0.49
CLK3-224ENST00000568605 LBPP18428 481 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 PRPS1L1P21108 318 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 S1PR1P21453 382 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 GNLYP22749 145 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 PTGER1P34995 402 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 KRT20P35900 424 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 MC3RP41968 323 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 PPP2R2AP63151 447 aa11.99□□□□□ -0.49
CLK3-224ENST00000568605 EMX2Q04743 252 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms