RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DRD2P14416 443 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 RAE1P78406 368 aaKnown RBP19.05■□□□□ 0.64
CLN3-219ENST00000565778 MGAT2Q10469 447 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 RPS6KA2Q15349 733 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 TRMT12Q53H54 448 aaKnown RBP19.05■□□□□ 0.64
CLN3-219ENST00000565778 TBCELQ5QJ74 424 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 WLSQ5T9L3 541 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 TDRPQ86YL5 185 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 CCDC116Q8IYX3 515 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 LRRC25Q8N386 305 aaPredicted RBP19.05■□□□□ 0.64
CLN3-219ENST00000565778 RPRMLQ8N4K4 120 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 ASB5Q8WWX0 329 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 SARAFQ96BY9 339 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 CNRIP1Q96F85 164 aaPredicted RBP19.05■□□□□ 0.64
CLN3-219ENST00000565778 ZNF681Q96N22 645 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 ANKRD33BA6NCL7 494 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 C19orf84I3L1E1 186 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 UBFD1O14562 309 aaKnown RBP19.04■□□□□ 0.64
CLN3-219ENST00000565778 COPEO14579 308 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 CRCPO75575 148 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 CPA3P15088 417 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 GPX3P22352 226 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 ACVR2AP27037 513 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 CRHR1P34998 444 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 PTGER4P35408 488 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 KIR3DL1P43629 444 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 NAA20P61599 178 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 RPP38P78345 283 aaKnown RBP19.04■□□□□ 0.64
CLN3-219ENST00000565778 DUSP2Q05923 314 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 HEPACAMQ14CZ8 416 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 LTB4RQ15722 352 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 IMPG1Q17R60 797 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 ACAD11Q709F0 780 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 C17orf47Q8NEP4 570 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 OR10Q1Q8NGQ4 319 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 SPPL2AQ8TCT8 520 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 EPS8L3Q8TE67 593 aaKnown RBP19.04■□□□□ 0.64
CLN3-219ENST00000565778 C16orf78Q8WTQ4 265 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLN3-219ENST00000565778 PCNX1Q96RV3 2341 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 NXF5Q9H1B4 397 aaKnown RBP19.04■□□□□ 0.64
CLN3-219ENST00000565778 B4GALT7Q9UBV7 327 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 ZNF639Q9UID6 485 aa19.04■□□□□ 0.64
CLN3-219ENST00000565778 ITPR2Q14571 2701 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 TLDC2A0PJX2 215 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 SERTM1A2A2V5 107 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 FIGNL2A6NMB9 653 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 PLIN3O60664 434 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 SNX4O95219 450 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 ANXA4P09525 319 aaPredicted RBP19.03■□□□□ 0.64
CLN3-219ENST00000565778 KRT4P19013 534 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 GDF1P27539 372 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 ABCD3P28288 659 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 TNFRSF8P28908 595 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 TRPC1P48995 793 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 FOXA1P55317 472 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 NUP107P57740 925 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 NNATQ16517 81 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 BICRALQ6AI39 1079 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 PACS2Q86VP3 889 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 LIX1Q8N485 282 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 SIMC1Q8NDZ2 872 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 OR52R1Q8NGF1 315 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 EXOSC8Q96B26 276 aaKnown RBP19.03■□□□□ 0.64
CLN3-219ENST00000565778 CTHRC1Q96CG8 243 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 LCORQ96JN0 433 aaPredicted RBP19.03■□□□□ 0.64
CLN3-219ENST00000565778 ZNF597Q96LX8 424 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 SECISBP2Q96T21 854 aaKnown RBP19.03■□□□□ 0.64
CLN3-219ENST00000565778 EBPLQ9BY08 206 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 ITPAQ9BY32 194 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 C12orf65Q9H3J6 166 aaKnown RBP19.03■□□□□ 0.64
CLN3-219ENST00000565778 ZNF703Q9H7S9 590 aaPredicted RBP19.03■□□□□ 0.64
CLN3-219ENST00000565778 ACKR4Q9NPB9 350 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 QPCTLQ9NXS2 382 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 RNF6Q9Y252 685 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 DTX4Q9Y2E6 619 aa19.03■□□□□ 0.64
CLN3-219ENST00000565778 NCOA6Q14686 2063 aaPredicted RBP19.02■□□□□ 0.64
CLN3-219ENST00000565778 LRRC3CA6NJW4 275 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 H3BQF6 201 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 CDH16O75309 829 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 TRIM3O75382 744 aaPredicted RBP19.02■□□□□ 0.64
CLN3-219ENST00000565778 TRAPPC6AO75865 159 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 ABCB1P08183 1280 aaPredicted RBP19.02■□□□□ 0.64
CLN3-219ENST00000565778 PCSK2P16519 638 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 NAGAP17050 411 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 CHRNB4P30926 498 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 TIA1P31483 386 aaKnown RBP eCLIP19.02■□□□□ 0.64
CLN3-219ENST00000565778 CASP3P42574 277 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 MASP1P48740 699 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 DNAJB13P59910 316 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 MRPS35P82673 323 aaKnown RBP19.02■□□□□ 0.64
CLN3-219ENST00000565778 LURAP1LQ8IV03 231 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 CCDC71Q8IV32 467 aaPredicted RBP19.02■□□□□ 0.64
CLN3-219ENST00000565778 SAMD14Q8IZD0 417 aaPredicted RBP19.02■□□□□ 0.64
CLN3-219ENST00000565778 LILRB4Q8NHJ6 448 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 RDH11Q8TC12 318 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 HSPBAP1Q96EW2 488 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 RILPQ96NA2 401 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 ANGPTL4Q9BY76 406 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 SHCBP1LQ9BZQ2 653 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms